molpopgen/demes-rs issues and pull requests

#270 - Add forward size history iterator

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#269 - refactor: uncouple demes::Graph::get_deme input/output lifetimes

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#268 - uncouple input/output lifetimes in Graph::get_deme_from_name

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#267 - Document a design decision

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment
Labels: documentation, demes

#266 - refactor: Graph::get_deme takes Into<DemeId> as argument

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#265 - Add cargo-semver-checks to CI

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#264 - Add ForwardGraph::size_at

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#263 - cache cbindgen in GitHub work flow

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#262 - bump versions after release

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#261 - chore: README and CHANGELOG updates

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#260 - Release prep

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#259 - test: update demes-spec submodule

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#258 - refactor!: mark SizeFunction non_exhaustive

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#257 - SizeFunction should be non_exhaustive

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment
Labels: good first issue, demes

#256 - Implement size_at method on Deme

Pull Request - State: closed - Opened by alxsimon over 1 year ago - 4 comments

#255 - test: test all size changes for test added in #253

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#254 - Changelog generation for workspace?

Issue - State: closed - Opened by molpopgen over 1 year ago - 2 comments

#253 - fix: fix conversion to backwards time when all end_times > 0.0

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#252 - idomatic fn names

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#251 - Refactor time rounding

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#250 - ForwardGraph time rounding

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#249 - refactor!: mark DemesError and DemesForardError non_exhaustive

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#248 - Mark error enums non-exhaustive

Issue - State: closed - Opened by molpopgen over 1 year ago

#247 - linear size history correctness

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#246 - Error types should be non_exhaustive

Issue - State: closed - Opened by molpopgen over 1 year ago
Labels: demes, demes-forward

#245 - refactor: OpaqueForwardGraph is no longer Send/Sync

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#244 - Round epoch start/end sizes

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#243 - reject non-integer deme sizes when constructing ForwardGraph

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#242 - feat: check if demes::Graph has non-integer sizes

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#241 - Support rounding deme sizes

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#240 - Add functions to check for non-integer deme sizes.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#239 - Need to catch start/end sizes of 0

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#238 - Add tests for changing migration rates

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#237 - Investigate correctness of linear size change

Issue - State: closed - Opened by molpopgen over 1 year ago
Labels: demes-forward, tests

#236 - test: Add test of importing model with bad epoch rounding

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#235 - Use discrete time formula for exponential size change.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#234 - Use discrete time formula for exponential size change

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#233 - fix: use discrete time formula for exponential size change.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#232 - OpaqueForwardGraph should not be Send + Sync

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment
Labels: demes-forward-capi

#231 - Forward time size history

Issue - State: open - Opened by molpopgen over 1 year ago - 3 comments
Labels: enhancement, demes-forward-capi, demes-forward

#230 - test: Add test of ancestry proportions for demes with size 0.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#229 - Most tests are integration tests

Issue - State: open - Opened by molpopgen over 1 year ago
Labels: demes-forward-capi, tests

#228 - refactor: Handle null pointer as error case

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#227 - Crate README files need simple example

Issue - State: open - Opened by molpopgen over 1 year ago
Labels: documentation, good first issue, demes, demes-forward-capi, demes-forward

#226 - Update workspace and crate README files

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#225 - feat: Support setting top-level metadata in Builder

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#224 - docs: Fix typo in crate-level documentation

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#223 - chore: Update Cargo.toml to point to correct homepage/repo.

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#222 - Typo in module documentation

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment
Labels: documentation, demes-forward

#221 - Tests accessing private fields

Issue - State: open - Opened by molpopgen about 2 years ago
Labels: demes-forward, tests

#220 - Python API

Issue - State: open - Opened by molpopgen over 1 year ago
Labels: demes-forward

#219 - Test coverage missing for error cases

Issue - State: open - Opened by molpopgen over 1 year ago
Labels: demes-forward-capi, tests

#218 - Update Cargo.toml package sections

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#217 - Update README files

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#216 - Need to migrate issues

Issue - State: closed - Opened by molpopgen over 1 year ago - 1 comment

#215 - convert to workspace

Pull Request - State: closed - Opened by molpopgen over 1 year ago - 2 comments

#214 - chore: define MSRV

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#213 - style: fix clippy lints

Pull Request - State: closed - Opened by molpopgen over 1 year ago

#212 - doc: remove Known Limitations section

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#211 - doc: pass rustdoc-args on docs.rs

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#210 - doc: build all features on docs.rs

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#209 - doc: Document json cargo feature

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#208 - use dtolnay rust toolchain for rustfmt

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#207 - test: use cargo hack to run tests

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#206 - feat: add JSON support via cargo feature

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#205 - doc: hide setup code in demes::load example

Pull Request - State: closed - Opened by molpopgen almost 2 years ago

#203 - Need a size calculation API

Issue - State: closed - Opened by molpopgen almost 2 years ago - 1 comment
Labels: enhancement, good first issue, demes

#171 - Separate HDM/MDM deme types.

Pull Request - State: closed - Opened by molpopgen almost 2 years ago - 1 comment

#169 - Deprecate/remove Builder::add_migration?

Issue - State: closed - Opened by molpopgen almost 2 years ago - 2 comments
Labels: good first issue, demes

#152 - Add ResolvedEpoch.

Pull Request - State: closed - Opened by molpopgen almost 2 years ago - 1 comment

#144 - Return Option<_> from AsymmetricMigration

Pull Request - State: closed - Opened by molpopgen about 2 years ago - 1 comment

#133 - Create dependabot.yml

Pull Request - State: closed - Opened by molpopgen over 2 years ago

#131 - Add demes-forward

Pull Request - State: closed - Opened by molpopgen over 2 years ago - 1 comment

#107 - GraphBuilder does not support metadata

Issue - State: closed - Opened by molpopgen over 2 years ago - 1 comment
Labels: demes

#84 - JSON support

Issue - State: closed - Opened by molpopgen over 2 years ago

#51 - Infinity

Issue - State: open - Opened by molpopgen over 2 years ago - 1 comment
Labels: demes

GitHub / molpopgen/demes-rs issues and pull requests