Ecosyste.ms: Issues

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GitHub / moloney/dcmstack issues and pull requests

#89 - test failures on big endian systems

Issue - State: open - Opened by emollier 4 months ago

#88 - prefer newer unittest.mock from standard library

Pull Request - State: closed - Opened by a-detiste 4 months ago - 1 comment

#87 - t/test_cli.py: port setup/teardown to pytest 8.

Pull Request - State: closed - Opened by emollier 4 months ago - 1 comment

#86 - Skip conversion on None type

Pull Request - State: closed - Opened by LinieKiste 12 months ago - 1 comment

#85 - MetaExtractor fails in case some DICOM fields are empty

Issue - State: closed - Opened by josiglo about 1 year ago - 2 comments

#84 - ENH: First attempt at multiframe support (3D only for now)

Pull Request - State: open - Opened by moloney over 1 year ago

#83 - MetaExtractor only works with pydicom.dataset

Issue - State: open - Opened by rmarrcode almost 2 years ago - 1 comment

#82 - CLN: Get rid of bunch of deprecation warnings

Pull Request - State: closed - Opened by moloney about 2 years ago - 1 comment

#81 - Rm dummies

Pull Request - State: closed - Opened by moloney about 2 years ago - 1 comment

#80 - Enh libjpeg

Pull Request - State: closed - Opened by moloney about 2 years ago

#79 - Bf cmp pytest

Pull Request - State: closed - Opened by moloney about 2 years ago

#78 - Add GitHub Action to run tests

Pull Request - State: closed - Opened by yarikoptic about 2 years ago - 1 comment

#77 - Migrate to pytest from nose

Pull Request - State: closed - Opened by yarikoptic about 2 years ago - 1 comment

#75 - needs a release

Issue - State: closed - Opened by yarikoptic about 2 years ago - 2 comments

#74 - Embedding of meta data does not work for multi channel (RGB) data

Issue - State: open - Opened by Spenhouet about 2 years ago - 3 comments

#73 - Nb 2.5 compat

Pull Request - State: closed - Opened by moloney almost 3 years ago

#72 - Use `.affine`, rather than `.get_affine()`

Pull Request - State: closed - Opened by pvelasco almost 3 years ago

#71 - What is the current state with respect to enhanced MRI (3D DICOMs)?

Issue - State: open - Opened by Spenhouet over 4 years ago - 8 comments

#70 - Update documentation with respect to pydicom

Issue - State: closed - Opened by Spenhouet over 4 years ago

#69 - Object of type DcmMetaExtension is not JSON serializable

Issue - State: closed - Opened by Spenhouet over 4 years ago - 1 comment

#67 - test error with Python3.8

Issue - State: closed - Opened by bcdarwin over 4 years ago - 4 comments

#66 - cut new release?

Issue - State: closed - Opened by mgxd over 4 years ago - 4 comments

#65 - pytest errors

Issue - State: closed - Opened by alcir almost 5 years ago - 1 comment

#63 - ValueError: could not convert string to float

Issue - State: closed - Opened by hamiltonjp about 5 years ago - 1 comment

#62 - dcmstack doesn't save unscaled data

Issue - State: open - Opened by moloney over 5 years ago

#61 - Python3 compatibility -- almost there (replace for #47)

Pull Request - State: closed - Opened by yarikoptic about 6 years ago - 9 comments

#60 - Pydicom compat

Pull Request - State: closed - Opened by moloney over 6 years ago

#59 - ENH: Initial attempt at a Travis-CI config

Pull Request - State: closed - Opened by moloney over 6 years ago

#58 - Fix #49: Negative data coercesed to uint. Add check for -'ve values.

Pull Request - State: closed - Opened by ashgillman over 6 years ago - 1 comment

#57 - BF: resort to "ascii" handling logic if chardet guessing was incorrect

Pull Request - State: closed - Opened by yarikoptic almost 7 years ago - 1 comment

#54 - DICOM sort

Issue - State: open - Opened by qinqian about 7 years ago

#53 - Explanation for json file, PhaseEncodingDirectionPositive

Issue - State: open - Opened by anbai106 about 7 years ago - 1 comment

#52 - Consider making me a collaborator on dcmstack?

Issue - State: open - Opened by matthew-brett over 7 years ago

#51 - Bug to convert philips DTI dcm files

Issue - State: open - Opened by anbai106 over 7 years ago - 1 comment

#50 - Doesn't appear to read Siemens .IMA files

Issue - State: closed - Opened by seldamat over 7 years ago - 3 comments

#49 - Conversion overflow

Issue - State: closed - Opened by ashgillman over 7 years ago - 18 comments

#48 - does not convert philips DTI dcm files

Issue - State: closed - Opened by mrjeffs over 7 years ago - 2 comments

#47 - Changes required to use dcmstack with Python 3

Pull Request - State: closed - Opened by ghisvail almost 8 years ago - 7 comments

#46 - original dicom voxel order

Issue - State: open - Opened by romainVala almost 8 years ago - 2 comments

#45 - python 3.* syntax

Pull Request - State: closed - Opened by TheChymera about 8 years ago - 3 comments

#44 - Import pydicom with the latest version of pydicom

Pull Request - State: closed - Opened by wenzhexue over 8 years ago - 1 comment

#43 - support for python 3

Issue - State: closed - Opened by satra over 8 years ago - 10 comments

#42 - ImageOrientationPatient and ImageType issues for creating stacks.

Issue - State: open - Opened by davecg over 8 years ago - 1 comment

#41 - Please put dcmstack on pypi

Issue - State: closed - Opened by chrisgorgo almost 9 years ago - 6 comments

#40 - incorrect grouping from same set of sequences

Issue - State: closed - Opened by satra almost 9 years ago - 4 comments

#39 - Extendig metadata JSON with Brain Imaging Data Structure fields

Issue - State: open - Opened by chrisgorgo almost 9 years ago - 1 comment

#38 - Fix typos found by codespell

Pull Request - State: closed - Opened by mih about 9 years ago

#37 - Excessive resource demands

Issue - State: open - Opened by mih about 9 years ago - 9 comments

#36 - Fix --list-translators

Pull Request - State: closed - Opened by mih about 9 years ago - 1 comment

#35 - dcmstack --list-translators broken

Issue - State: closed - Opened by mih about 9 years ago

#34 - Debian packaging.

Pull Request - State: open - Opened by mih about 9 years ago - 3 comments

#32 - nitool split/merge is broken with updated nibabel

Issue - State: closed - Opened by moloney about 9 years ago

#31 - parse_and_stack output (dcmstack object)

Issue - State: closed - Opened by TheChymera over 9 years ago - 1 comment

#30 - Paralellization and multithreading support?

Issue - State: closed - Opened by TheChymera over 9 years ago - 4 comments

#29 - Slice thickness calculation?

Issue - State: closed - Opened by TheChymera over 9 years ago - 4 comments

#28 - dcmstach support for multi-EPI

Issue - State: closed - Opened by TheChymera over 9 years ago - 8 comments

#27 - Conversion of muti-channel multi-echo MRI data

Issue - State: closed - Opened by brennerd11 over 9 years ago - 4 comments

#26 - Verify element name before attempting translation

Pull Request - State: closed - Opened by kevlarkevin about 10 years ago - 6 comments

#25 - dicom COL,ROW vs nifti ROW,COL

Issue - State: closed - Opened by kevlarkevin over 10 years ago - 3 comments

#24 - Fail to convert DICOM files

Issue - State: closed - Opened by chrisgorgo over 10 years ago - 12 comments

#23 - Please add version information

Issue - State: closed - Opened by chrisgorgo over 10 years ago - 1 comment

#22 - problem with phase difference image

Issue - State: closed - Opened by juhuntenburg over 10 years ago - 2 comments

#21 - proper way to install

Issue - State: closed - Opened by ag-bell over 10 years ago - 3 comments

#20 - [enh-arbitrary-dimensions] 4d enhanced voxel_ordering wrong

Issue - State: open - Opened by bpinsard almost 11 years ago

#19 - Make reorientation optional

Issue - State: closed - Opened by chrisgorgo about 11 years ago - 2 comments

#18 - Add support for tar files

Issue - State: open - Opened by chrisgorgo about 11 years ago

#17 - fix: match reader to the number of bytes in elements

Pull Request - State: closed - Opened by satra about 11 years ago - 3 comments

#16 - parse_and_group error

Issue - State: closed - Opened by satra about 11 years ago - 5 comments

#15 - WIP: try for compatibility with pydicom 0.9.6

Pull Request - State: closed - Opened by matthew-brett over 11 years ago - 1 comment

#14 - Problematic dataset

Issue - State: closed - Opened by chrisgorgo over 11 years ago - 2 comments

#13 - setup.py

Issue - State: closed - Opened by bpinsard over 11 years ago - 2 comments

#12 - just fixed a typo

Pull Request - State: closed - Opened by ag-bell over 11 years ago

#11 - Problems with large multisequence data

Issue - State: closed - Opened by chrisgorgo over 11 years ago - 4 comments

#10 - dcmstack fails to convert certain sets of DICOM files

Issue - State: closed - Opened by chrisgorgo over 11 years ago - 2 comments

#9 - dcmstack does not report errors if no DICOMS were found

Issue - State: closed - Opened by chrisgorgo over 11 years ago - 2 comments

#8 - non utf-8 strings

Issue - State: closed - Opened by bpinsard over 11 years ago - 6 comments

#7 - phase fieldmaps not converting

Pull Request - State: closed - Opened by akeshavan over 11 years ago - 2 comments

#6 - niftiwrapper IO

Issue - State: closed - Opened by bpinsard over 11 years ago - 8 comments

#5 - voxel_order bug?

Issue - State: closed - Opened by bpinsard almost 12 years ago - 2 comments

#4 - Dicom Anonymizer

Pull Request - State: open - Opened by ssikka almost 12 years ago - 2 comments

#3 - confusion about AcquisitionTime

Issue - State: closed - Opened by bpinsard about 12 years ago - 5 comments

#2 - Enh/srcfilenames

Pull Request - State: closed - Opened by satra about 12 years ago - 9 comments

#1 - Added basic Enhanced DICOM Support for 3D scans

Pull Request - State: closed - Opened by nicholsn about 12 years ago - 5 comments