Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / molgenis/vip-report issues and pull requests

#156 - fix:write empty json objects

Pull Request - State: closed - Opened by dennishendriksen 2 months ago - 1 comment

#105 - chore:bump vip.report.template.version 3.1.2 to 3.1.3

Pull Request - State: closed - Opened by dennishendriksen over 2 years ago - 1 comment

#105 - chore:bump vip.report.template.version 3.1.2 to 3.1.3

Pull Request - State: closed - Opened by dennishendriksen over 2 years ago - 1 comment

#104 - refactor: store report data as application/gzip script

Pull Request - State: closed - Opened by dennishendriksen almost 3 years ago - 1 comment

#104 - refactor: store report data as application/gzip script

Pull Request - State: closed - Opened by dennishendriksen almost 3 years ago - 1 comment

#103 - Fix 102: Genes file is incorrectly filtered for GRCh38 and other 'chr…

Pull Request - State: closed - Opened by bartcharbon almost 3 years ago - 1 comment

#103 - Fix 102: Genes file is incorrectly filtered for GRCh38 and other 'chr…

Pull Request - State: closed - Opened by bartcharbon almost 3 years ago - 1 comment

#100 - Bump version to 2.3.0

Pull Request - State: closed - Opened by bartcharbon about 3 years ago - 1 comment

#100 - Bump version to 2.3.0

Pull Request - State: closed - Opened by bartcharbon about 3 years ago - 1 comment

#99 - Bump template version to 2.7.3

Pull Request - State: closed - Opened by bartcharbon about 3 years ago - 1 comment

#99 - Bump template version to 2.7.3

Pull Request - State: closed - Opened by bartcharbon about 3 years ago - 1 comment

#98 - Ped code duplication with vip-inheritance-matcher

Issue - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#98 - Ped code duplication with vip-inheritance-matcher

Issue - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#97 - refactor: remove unnecessary calls to toString()

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 2 comments

#97 - refactor: remove unnecessary calls to toString()

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 2 comments

#96 - Build improvements

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#96 - Build improvements

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#95 - Update java.version from 11 to 17

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#95 - Update java.version from 11 to 17

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#94 - max_records setting seems to be broken

Issue - State: closed - Opened by bartcharbon about 3 years ago - 1 comment
Labels: bug

#94 - max_records setting seems to be broken

Issue - State: closed - Opened by bartcharbon about 3 years ago - 1 comment
Labels: bug

#92 - Fix#91 hg19.fa.gz is an invalid reference sequence filename

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#92 - Fix#91 hg19.fa.gz is an invalid reference sequence filename

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#91 - hg19.fa.gz is an invalid reference sequence filename

Issue - State: closed - Opened by dennishendriksen about 3 years ago
Labels: bug

#91 - hg19.fa.gz is an invalid reference sequence filename

Issue - State: closed - Opened by dennishendriksen about 3 years ago
Labels: bug

#90 - Update vip.report.template 2.6.3 to 2.6.4

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#89 - Update vip.report.template 2.6.2 to 2.6.3

Pull Request - State: closed - Opened by dennishendriksen about 3 years ago - 1 comment

#88 - Chore/bump template2.6.2

Pull Request - State: closed - Opened by bartcharbon over 3 years ago - 1 comment

#87 - update decisiontree json name and template version

Pull Request - State: closed - Opened by bartcharbon over 3 years ago - 1 comment

#86 - Add decision tree json to report data

Pull Request - State: closed - Opened by bartcharbon over 3 years ago - 1 comment

#85 - Update vip.report.template 2.5.0 to 2.5.1

Pull Request - State: closed - Opened by dennishendriksen over 3 years ago

#84 - update vip-report-template 2.4.0 to 2.5.0

Pull Request - State: closed - Opened by dennishendriksen over 3 years ago - 1 comment

#83 - Embedded alignment data

Pull Request - State: closed - Opened by dennishendriksen over 3 years ago - 1 comment

#82 - Bump pom

Pull Request - State: closed - Opened by bartcharbon over 3 years ago - 1 comment

#81 - Embedded genes data

Pull Request - State: closed - Opened by dennishendriksen almost 4 years ago - 1 comment

#80 - Embedded reference sequence data

Pull Request - State: closed - Opened by dennishendriksen almost 4 years ago - 1 comment

#79 - Update vip-report to use vip-report-template v2.0.0

Pull Request - State: closed - Opened by dennishendriksen almost 4 years ago - 1 comment

#78 - Bump version 1.7.0 to 1.8.0, bump template version 1.7.0 to 1.8.0

Pull Request - State: closed - Opened by dennishendriksen almost 4 years ago

#77 - add option to specify the genome assembly

Issue - State: open - Opened by bartcharbon almost 4 years ago - 1 comment
Labels: enhancement

#76 - Change type of HGNC_ID to string because of 'HGNC:' prefix in b38 runs.

Pull Request - State: closed - Opened by bartcharbon almost 4 years ago

#75 - update template version + stabilize POM

Pull Request - State: closed - Opened by bartcharbon almost 4 years ago

#73 - Bump application version to 1.7.0-SNAPSHOT

Pull Request - State: closed - Opened by bartcharbon about 4 years ago - 1 comment

#72 - Some generated omim links are broken

Issue - State: closed - Opened by marikaris about 4 years ago
Labels: bug

#71 - Bump version after release 1.5.0

Pull Request - State: closed - Opened by bartcharbon about 4 years ago - 1 comment

#70 - Bump application version and template version (1.5.0)

Pull Request - State: closed - Opened by bartcharbon about 4 years ago - 1 comment

#69 - Support VEP InheritanceModesGene element from Inheritance plugin

Pull Request - State: closed - Opened by dennishendriksen about 4 years ago - 1 comment

#68 - Bump version 1.4.0 to 1.4.1

Pull Request - State: closed - Opened by dennishendriksen about 4 years ago - 1 comment

#67 - chore: bump version (module and template) 1.3.0 to 1.4.0

Pull Request - State: closed - Opened by bartcharbon about 4 years ago - 1 comment

#66 - Bump vip.report.template.version 1.2.1 to 1.3.0

Pull Request - State: closed - Opened by dennishendriksen about 4 years ago - 1 comment

#65 - Support VEP HPO element from Hpo plugin

Pull Request - State: closed - Opened by dennishendriksen about 4 years ago - 1 comment

#64 - Bump vip.report.template.version 1.2.0 to 1.2.1

Pull Request - State: closed - Opened by dennishendriksen about 4 years ago - 1 comment

#63 - Probands command-line argument

Pull Request - State: closed - Opened by dennishendriksen about 4 years ago - 1 comment

#62 - Fix HPO prefix in parameter description

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#61 - Improve security travis releases

Issue - State: closed - Opened by svandenhoek over 4 years ago - 2 comments
Labels: enhancement

#60 - chore: bump version 1.0.3 to 1.0.4-SNAPSHOT

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#59 - Bump module and template version from 1.0.2 to 1.0.3

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#57 - Bump vip-report-template 1.0.1 to 1.0.2

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#56 - Bump vip-report-template 1.0.0 to 1.0.1

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#55 - Store data compressed to reduce report size

Issue - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment
Labels: enhancement

#54 - Bump vip-report-template 0.0.8 to 1.0.0

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#53 - chore: bump version 0.0.9 to 1.0.0-SNAPSHOT and update parent pom.xml

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#52 - Collect aggregate data

Issue - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment
Labels: enhancement

#51 - Treat VEP PUBMED annotations as list of identifiers instead of string

Issue - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment
Labels: enhancement

#50 - Store allele index instead of alleles for genotype

Issue - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment
Labels: enhancement

#49 - Fix #46: Overwrite default record threshold on command-line

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#48 - Fix #47: Detect human_g1k_v37_phiX.fasta assembly as GRCh37

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#47 - Detect human_g1k_v37_phiX.fasta assembly as GRCh37

Issue - State: closed - Opened by dennishendriksen over 4 years ago

#46 - Overwrite default record threshold on command-line

Issue - State: closed - Opened by dennishendriksen over 4 years ago

#42 - feature: improved pubmed parsing

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#41 - Bump pom.xml version 0.0.8 to 0.0.9-SNAPSHOT

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#40 - Update spring-boot-starter-parent 2.3.0.RELEASE to 2.3.1.RELEASE

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#39 - feature: update default report

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#38 - chore: bump version

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#37 - feature: update default template 0.0.5 to 0.0.6

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#36 - feature: update default template

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#35 - update pom version to 0.0.7-SNAPSHOT

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#34 - stabilize pom to 0.0.6

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#33 - feature: add format metadata and data

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#32 - chore: bump version 0.0.5 to 0.0.6-SNAPSHOT

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#31 - feature: vep metadata mapper improvements

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#30 - fix: workaround htsjdk string <--> list issue

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#29 - feature: update default template

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#28 - feat: Nested INFO (VEP/SnpEFF support)

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#27 - Replace Phenopacket model with lombok classes

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#26 - remove 'individualToSampleIdentifiersCount' from htsFile

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#25 - Fix missing genomeassembly in htsFile

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#24 - fix: uberjar

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#23 - apply google formatting

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#22 - apply google formatting

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#21 - Update template version to 0.0.2

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#20 - Fix genotype order

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#19 - feat: expose data in info fields

Pull Request - State: closed - Opened by dennishendriksen over 4 years ago - 1 comment

#18 - strict json assert for API test + fix expected result

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment

#17 - Add HtsFile to response

Pull Request - State: closed - Opened by bartcharbon over 4 years ago - 1 comment