molgenis/vip-report-template issues and pull requests

#327 - update 'SV' variant type label to 'SV/CNV'

Pull Request - State: closed - Opened by dennishendriksen about 1 month ago

#326 - bump dependencies

Pull Request - State: closed - Opened by dennishendriksen about 1 month ago

#325 - PoC original straglr

Pull Request - State: open - Opened by bartcharbon about 1 month ago

#324 - Fix: dev modus broken after <a> to <A> switch

Pull Request - State: closed - Opened by bartcharbon 3 months ago

#323 - Fix travis

Pull Request - State: closed - Opened by bartcharbon 3 months ago

#322 - Fix: #319 Report navigation broken due to the addition of a drive let…

Pull Request - State: closed - Opened by bartcharbon 3 months ago

#321 - chore(deps-dev): bump ws from 8.17.0 to 8.17.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies

#320 - chore(deps-dev): bump braces from 3.0.2 to 3.0.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies

#319 - Report navigation broken due to the addition of a drive letter in the path

Issue - State: closed - Opened by bartcharbon 4 months ago

#318 - Add sampletree path to variant consequence screen

Pull Request - State: closed - Opened by bartcharbon 4 months ago

#317 - Revert "Fix #312 ClinVar conflicting filter broken"

Pull Request - State: closed - Opened by dennishendriksen 4 months ago

#316 - Scroll variant table and filters independently

Pull Request - State: closed - Opened by bartcharbon 4 months ago

#315 - bump dependencies, fix coverage, fix travis

Pull Request - State: closed - Opened by dennishendriksen 4 months ago

#314 - Remove DP filter and indicator + move effect link to VIP classification

Pull Request - State: closed - Opened by bartcharbon 4 months ago

#313 - Fix #312 ClinVar conflicting filter broken

Pull Request - State: closed - Opened by dennishendriksen 4 months ago

#312 - ClinVar conflicting filter broken

Issue - State: closed - Opened by dennishendriksen 4 months ago
Labels: bug

#311 - Incorrect error message when report contains too much data

Issue - State: open - Opened by dennishendriksen 4 months ago
Labels: bug

#310 - bump dependencies

Pull Request - State: closed - Opened by dennishendriksen 5 months ago

#309 - navigation improvements, clarify view differences, fix variant table paging

Pull Request - State: closed - Opened by dennishendriksen 6 months ago

#308 - STR's should be filtered based on ALT rather than SVType

Issue - State: open - Opened by bartcharbon 6 months ago

#307 - chore(deps-dev): bump vite from 5.0.12 to 5.0.13

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#306 - Bump template version 6.0.1

Pull Request - State: closed - Opened by bartcharbon 8 months ago

#305 - Fix: variant type filter state is incorrectly restored

Pull Request - State: closed - Opened by bartcharbon 8 months ago

#304 - Fix: MT and YL default selected

Pull Request - State: closed - Opened by bartcharbon 8 months ago

#303 - Parse vcf using supplied additional metadata

Pull Request - State: closed - Opened by dennishendriksen 8 months ago

#302 - chore(deps-dev): bump vite from 5.0.6 to 5.0.12

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#301 - Poc/methylation

Pull Request - State: open - Opened by dennishendriksen 9 months ago

#300 - Fix GRCh38 mock .cram

Pull Request - State: closed - Opened by dennishendriksen 9 months ago

#299 - Add MT and YL support

Pull Request - State: closed - Opened by bartcharbon 9 months ago

#298 - Support additional gnomAD annotations

Pull Request - State: closed - Opened by dennishendriksen 10 months ago

#297 - chore(deps-dev): bump vite from 4.4.9 to 4.4.12

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#296 - Feat: support variant type filtering

Pull Request - State: closed - Opened by bartcharbon 10 months ago

#295 - Feat: Improved inheritance filtering: denovo possible, gene inc. pen.,inheritance modes

Pull Request - State: closed - Opened by bartcharbon 10 months ago - 1 comment

#294 - Fix: missing GQ not showing if filters checked

Pull Request - State: closed - Opened by bartcharbon 11 months ago

#293 - Fix travis publish (node_js 18)

Pull Request - State: closed - Opened by bartcharbon 11 months ago

#292 - Bump vip-report-vcf and vip-report-api

Pull Request - State: closed - Opened by bartcharbon 11 months ago

#291 - Timestamp download filenames

Pull Request - State: closed - Opened by dennishendriksen 11 months ago

#290 - Fix breadcrumb text overflow for long alleles

Pull Request - State: closed - Opened by dennishendriksen 11 months ago

#289 - chore(deps-dev): bump @babel/traverse from 7.22.17 to 7.23.2

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 2 comments
Labels: dependencies

#288 - Fix compound indicator for genes wihout known inheritance modes

Pull Request - State: closed - Opened by bartcharbon 12 months ago

#287 - chore(deps-dev): bump postcss from 8.4.29 to 8.4.31

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 2 comments
Labels: dependencies

#286 - 'Help' view with link to docs

Pull Request - State: closed - Opened by dennishendriksen about 1 year ago

#285 - fix: update ClinVar ID field

Pull Request - State: closed - Opened by dennishendriksen about 1 year ago

#284 - Update inheritance filter descriptions

Pull Request - State: closed - Opened by dennishendriksen about 1 year ago

#283 - Fix #282 Error on missing `clinVar_CLNSIG/clinVar_CLNREVSTAT`

Pull Request - State: closed - Opened by dennishendriksen about 1 year ago

#282 - Error if `clinVar` field exists but `clinVar_CLNSIG/clinVar_CLNREVSTAT` field doesn't

Issue - State: closed - Opened by dennishendriksen about 1 year ago
Labels: bug

#281 - HPO filter does not show if decision tree is not provided through the cmd arguments

Issue - State: open - Opened by bartcharbon about 1 year ago - 3 comments
Labels: bug

#280 - Improved inheritance filtering.

Pull Request - State: closed - Opened by bartcharbon about 1 year ago

#279 - chore: bump dependencies

Pull Request - State: closed - Opened by dennishendriksen about 1 year ago

#278 - Variant source SNV/STR/SV filter option

Issue - State: closed - Opened by dennishendriksen about 1 year ago - 1 comment
Labels: enhancement

#277 - Update vip-report-template version

Pull Request - State: closed - Opened by bartcharbon about 1 year ago

#276 - Fix #275: GADO default HC filter not working properly

Pull Request - State: closed - Opened by bartcharbon about 1 year ago

#275 - GADO default HC filter not working properly

Issue - State: closed - Opened by bartcharbon about 1 year ago

#273 - Bump version to 5.5.0

Pull Request - State: closed - Opened by bartcharbon about 1 year ago

#272 - Improve gado test data + fix gado query

Pull Request - State: closed - Opened by bartcharbon about 1 year ago

#271 - pnpm update --latest, but update prettier from 2.8.7 to 2.8.8

Pull Request - State: closed - Opened by dennishendriksen about 1 year ago

#270 - Add gado to report template

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#269 - Bump api to 4.3.5

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#268 - Add description for Denovo explaining the rules used to determine this.

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#267 - Rank genes based on a patient’s phenotypes using GADO

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago - 1 comment

#266 - bump version to 5.3.0

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#265 - Show classification tree path on hover

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#264 - Licensing issue.

Issue - State: closed - Opened by Sreelakshmikm22 over 1 year ago - 3 comments

#263 - ClinVar 'no value' category for variant filter

Issue - State: closed - Opened by dennishendriksen over 1 year ago - 1 comment
Labels: enhancement

#262 - fix:bump igv 2.15.3 to 2.15.4

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#261 - pnpm update --latest

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#260 - License Compliance is at medium risk

Issue - State: closed - Opened by Sreelakshmikm22 over 1 year ago - 1 comment

#259 - individual ID showing above quality and inheritance checkboxes

Issue - State: closed - Opened by bartcharbon over 1 year ago - 1 comment

#258 - Fix #257 Do not show read depth warning indicator if read depth is null

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#257 - Do not show read depth warning indicator if read depth is null

Issue - State: closed - Opened by dennishendriksen over 1 year ago
Labels: bug

#256 - select number of records per page

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#255 - feat:HPO links to https://hpo.jax.org/

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#254 - Fix #252 Unicode character rendering broken

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#253 - Fix (Default) allelic imbalance filter

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#252 - Unicode character rendering broken

Issue - State: closed - Opened by dennishendriksen over 1 year ago
Labels: bug

#251 - Fix #246 Columns shift in case of additional VEP annotations

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#250 - fix:security vulnerability / bump all deps

Pull Request - State: closed - Opened by dennishendriksen over 1 year ago

#249 - Show variants with 'undefined' inheritance match when checkbox is checked.

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#248 - Show variants with 'null' inheritance match when checkbox is checked.

Pull Request - State: closed - Opened by bartcharbon over 1 year ago

#247 - chore(deps): bump json5 from 2.2.1 to 2.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies