Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / molgenis/ngs_rna issues and pull requests

#61 - remove trimmed reads to prevent copying to prm

Pull Request - State: closed - Opened by Gerbenvandervries about 2 months ago

#60 - test trigger

Pull Request - State: open - Opened by RoanKanninga 2 months ago

#59 - Relocated tmp

Pull Request - State: closed - Opened by Gerbenvandervries 2 months ago

#58 - fix for new bucket fileStructure

Pull Request - State: closed - Opened by Gerbenvandervries 5 months ago

#57 - Update parameters.talos.csv

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#56 - Update test_pipeline.sh

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#55 - Update parameters.talos.csv

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#54 - trigger jenkins; do not merge

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#53 - TRIGGER; Update Jenkinsfile

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#52 - Update test_pipeline.sh

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#51 - updating NGS_RNA for diagnostics

Pull Request - State: closed - Opened by kdelange 6 months ago

#50 - Trigger; DO NOT MERGE

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#49 - trigger

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#48 - Trigger Jenkins build; DO NOT MERGE

Pull Request - State: closed - Opened by marieke-bijlsma 6 months ago

#47 - PR from Gerben

Pull Request - State: closed - Opened by kdelange 8 months ago

#46 - rna DE fixes, and fixes for SR data

Pull Request - State: closed - Opened by Gerbenvandervries 8 months ago

#45 - New makeConcordanceVCF step, parameter files update

Pull Request - State: closed - Opened by Gerbenvandervries about 1 year ago

#44 - Improved indentation check.

Pull Request - State: closed - Opened by pneerincx over 1 year ago

#43 - Update Jenkinsfile

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#42 - Fix indentation

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#41 - minor bugfixes for autotest

Pull Request - State: closed - Opened by Gerbenvandervries almost 2 years ago

#40 - Fix indentation

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#39 - Fix indentationcheck.sh

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#38 - Add circleci config and updated Jenkinsfile

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#37 - Add automated test

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#36 - test autotest

Pull Request - State: closed - Opened by Gerbenvandervries almost 2 years ago

#35 - RNASeQC with plots, fastq combining and additional bugfixes

Pull Request - State: closed - Opened by Gerbenvandervries about 2 years ago

#34 - Rename JenkinsFile to Jenkinsfile

Pull Request - State: closed - Opened by marieke-bijlsma about 2 years ago

#33 - Add JenkinsFile

Pull Request - State: closed - Opened by marieke-bijlsma about 2 years ago

#32 - working to release NGS_RNA 5.0.0

Pull Request - State: closed - Opened by Gerbenvandervries over 2 years ago

#31 - ProcessReadCounts.jar missing in ngs-utils/21.04.2

Issue - State: closed - Opened by kdelange about 3 years ago

#29 - readme update and bugfixes

Pull Request - State: closed - Opened by Gerbenvandervries over 3 years ago

#28 - fender parameters and bugfiixes

Pull Request - State: closed - Opened by Gerbenvandervries over 3 years ago

#27 - update RNA pipeline

Pull Request - State: closed - Opened by Gerbenvandervries over 3 years ago

#26 - shellcheck updates

Pull Request - State: closed - Opened by kdelange over 4 years ago - 1 comment

#24 - fixed typo in parameters.csv

Pull Request - State: closed - Opened by kdelange over 4 years ago - 1 comment

#23 - Stranded.sh script + updated workflow

Pull Request - State: closed - Opened by kdelange over 4 years ago - 1 comment

#22 - star

Pull Request - State: closed - Opened by Gerbenvandervries over 4 years ago

#21 - updates NGSRNA

Pull Request - State: closed - Opened by kdelange over 4 years ago - 1 comment

#20 - star protocol

Pull Request - State: closed - Opened by Gerbenvandervries over 4 years ago

#19 - updated parameters.csv

Pull Request - State: closed - Opened by kdelange over 4 years ago - 1 comment

#18 - trigger

Pull Request - State: closed - Opened by marieke-bijlsma almost 5 years ago - 5 comments

#17 - trigger build

Pull Request - State: closed - Opened by marieke-bijlsma almost 5 years ago - 2 comments

#16 - Create LICENSE

Pull Request - State: closed - Opened by dennishendriksen about 5 years ago - 1 comment

#15 - versionNumber

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#14 - changed group for test

Pull Request - State: closed - Opened by RoanKanninga almost 7 years ago

#13 - Trace and trace additions

Pull Request - State: closed - Opened by Gerbenvandervries almost 7 years ago

#12 - Remove hard coded group

Pull Request - State: closed - Opened by Gerbenvandervries almost 7 years ago

#11 - automated generate template

Pull Request - State: closed - Opened by Gerbenvandervries almost 7 years ago

#10 - bugfix pipefail

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago

#9 - add set -o pipefail in script

Issue - State: closed - Opened by RoanKanninga about 7 years ago

#8 - Update Readme?

Pull Request - State: closed - Opened by mmterpstra over 7 years ago

#7 - library fix, mem fixes

Pull Request - State: closed - Opened by Gerbenvandervries over 7 years ago

#6 - Review duplicate marking by lane/barcode/run

Issue - State: closed - Opened by mmterpstra over 7 years ago - 1 comment

#5 - added multiQC, moved trimming

Pull Request - State: closed - Opened by Gerbenvandervries over 7 years ago

#4 - added boxy parameter, fix for environment check

Pull Request - State: closed - Opened by Gerbenvandervries almost 8 years ago

#3 - removes scancel molgenis user

Pull Request - State: closed - Opened by Gerbenvandervries about 8 years ago

#2 - return of Kallisto for PE data

Pull Request - State: closed - Opened by Gerbenvandervries over 8 years ago

#1 - first commit

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago