molgenis/ngs_dna issues and pull requests

#39 - Update README.md

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#38 - Update README.md

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#37 - Update README.md

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#37 - Update README.md

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#36 - update to sambamba-0.6.3 (bug in markdup)

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#36 - update to sambamba-0.6.3 (bug in markdup)

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#35 - added sleep when pipeline is not finished yet

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#35 - added sleep when pipeline is not finished yet

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#34 - still fixing

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#34 - still fixing

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#33 - fix HS metrics for UMCG WGS test

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#33 - fix HS metrics for UMCG WGS test

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#32 - typo in workflow

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#32 - typo in workflow

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#31 - fix autotest

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#31 - fix autotest

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#30 - fix

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#30 - fix

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#29 - fix

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#28 - revert workflow

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#27 - changed capturingkit in samplesheet

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#27 - changed capturingkit in samplesheet

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#26 - added autotest

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#26 - added autotest

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#25 - Use Cram conversion for storing bam files

Issue - State: closed - Opened by RoanKanninga over 8 years ago - 1 comment
Labels: enhancement

#24 - Store g.vcf as g.vcf.gz

Issue - State: closed - Opened by RoanKanninga over 8 years ago - 1 comment
Labels: enhancement

#23 - Quality by cycle metrics calculation needed?

Issue - State: open - Opened by RoanKanninga over 8 years ago
Labels: enhancement

#23 - Quality by cycle metrics calculation needed?

Issue - State: open - Opened by RoanKanninga over 8 years ago
Labels: enhancement

#22 - reverting 3.2.4 beta

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#21 - Only show targetBEDs for diagnostics

Pull Request - State: closed - Opened by Gerbenvandervries over 8 years ago

#21 - Only show targetBEDs for diagnostics

Pull Request - State: closed - Opened by Gerbenvandervries over 8 years ago

#20 - removing started and finished files from every step at the end of the…

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#20 - removing started and finished files from every step at the end of the…

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#19 - removed Automated part dependencies out of the NGS_DNA pipeline

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#19 - removed Automated part dependencies out of the NGS_DNA pipeline

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#18 - fix ebroot variable

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#18 - fix ebroot variable

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#17 - variantcalling fix

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#16 - added footer

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#15 - fixes in VariantCalling

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#14 - bugfix in CreateExternSamples + change of rootpath in parameters_host

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#13 - upgraded to new sambamba version + new wktohtmltopdf

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#12 - updates for new clean cluster

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#11 - 3.2.3

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#10 - renamed batchIDList to batchIDList_small + fixing Gender protocols when there is no ChrX present

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#9 - 3.2.3

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#8 - 3.2.3

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#7 - changed CoverageCalculations directory + bugfix

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#6 - samplesheet should say which bed files to use for coverage calculations

Issue - State: closed - Opened by RoanKanninga over 8 years ago - 1 comment
Labels: enhancement

#5 - Optimalizing batching for diagnostics

Issue - State: closed - Opened by RoanKanninga over 8 years ago - 1 comment
Labels: enhancement

#4 - 3.2.3

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#3 - added groupname variable + bugfix in CopyToResults protocol

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#2 - 3.2.3

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#1 - 3.2.3

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

GitHub / molgenis/ngs_dna issues and pull requests