Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / molgenis/ngs_dna issues and pull requests

#99 - fixing issue when there is no Controlsgroup available

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#99 - fixing issue when there is no Controlsgroup available

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#98 - added missing header in output decision tree

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#98 - added missing header in output decision tree

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#96 - fixing crash in XHMM when Gender is unknown

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#95 - added copying decision tree results

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#94 - update generate_template

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#94 - update generate_template

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#93 - Added ConvadingXHMM decision tree

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#93 - Added ConvadingXHMM decision tree

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#91 - removed module load CADD since it is in Gavin-Toolpack

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#90 - fixes in makecontrolsgroup convading/xhmm, gavin and generate_template

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#90 - fixes in makecontrolsgroup convading/xhmm, gavin and generate_template

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#89 - removed hardcoded path to CADD/score.sh

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#88 - last minute bugfix in Gavin replacing HOM annotation

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#87 - replacing some types in GAVIN

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#86 - gavin.sh type relacements

Issue - State: closed - Opened by Gerbenvandervries almost 8 years ago

#85 - interval_list instead of bedfile in CoverageCalculations

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#84 - 3.3.0

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#84 - 3.3.0

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#82 - updated parameters file and copyToResultsDir

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#82 - updated parameters file and copyToResultsDir

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#81 - updated parameters for zinc-finger

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#81 - updated parameters for zinc-finger

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#79 - updated sambamba version (with possible fix for weird crashes)

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#78 - 3.3.0

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#77 - 3.3.0

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#77 - 3.3.0

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#76 - added Gavin + Manta results to resultsfolder

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#75 - include snpEff back in the pipeline

Issue - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment
Labels: enhancement

#74 - moving emit_conf and call_conf to VariantGenotyping

Issue - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment
Labels: enhancement

#74 - moving emit_conf and call_conf to VariantGenotyping

Issue - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment
Labels: enhancement

#73 - fixing coveragecalculations

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#73 - fixing coveragecalculations

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#72 - fix Manta

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#71 - fix manta

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#70 - fix g.vcf.gz when there are more than 200 samples

Issue - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment
Labels: enhancement

#70 - fix g.vcf.gz when there are more than 200 samples

Issue - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment
Labels: enhancement

#68 - test GATK 3.6

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#68 - test GATK 3.6

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#67 - updated pipeline version in generate_template

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#67 - updated pipeline version in generate_template

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#66 - added 5GPM WGS analysis + bugfixes

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#65 - cleaning up + adding xhmm and convading protocols

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#65 - cleaning up + adding xhmm and convading protocols

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#64 - md5sum of second read is not in correct name format

Issue - State: closed - Opened by RoanKanninga about 8 years ago

#64 - md5sum of second read is not in correct name format

Issue - State: closed - Opened by RoanKanninga about 8 years ago

#63 - fq.gz files are overwritten from symlink to real file..

Issue - State: closed - Opened by RoanKanninga about 8 years ago
Labels: bug

#63 - fq.gz files are overwritten from symlink to real file..

Issue - State: closed - Opened by RoanKanninga about 8 years ago
Labels: bug

#62 - added reanalysis workflow + depending protocol changes

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment

#62 - added reanalysis workflow + depending protocol changes

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago - 1 comment

#61 - 3.2.5

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#61 - 3.2.5

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#60 - test

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#60 - test

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#57 - moved custom headers from compute repo to NGS_DNA + fixing jenkins

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#57 - moved custom headers from compute repo to NGS_DNA + fixing jenkins

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#56 - moved custom headers from compute repo to NGS_DNA + fixing jenkins

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#56 - moved custom headers from compute repo to NGS_DNA + fixing jenkins

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#55 - jenkins fixes + moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#55 - jenkins fixes + moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#54 - jenkins fixes + moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#54 - jenkins fixes + moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#53 - jenkins fixes + moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#52 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#51 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#51 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#50 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#50 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#49 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#48 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#48 - moved custom headers from compute repo to NGS_DNA

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#47 - test README

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#47 - test README

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#46 - test jenkins hook

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#46 - test jenkins hook

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#45 - .

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#45 - .

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#44 - testpipeline update

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#43 - added new version to generate_template

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#43 - added new version to generate_template

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#42 - changed waiting time autotest

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#42 - changed waiting time autotest

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#41 - updated also toolname

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#41 - updated also toolname

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#40 - autotest: add check when error in pipeline

Issue - State: closed - Opened by RoanKanninga over 8 years ago - 1 comment
Labels: enhancement

#39 - Update README.md

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago