molgenis/ngs_demultiplexing issues and pull requests

#106 - fix recreate symlink issue + mac2unix/dos2unix replacement

Pull Request - State: open - Opened by RoanKanninga 8 months ago

#105 - bugfix for new runType UMI. Replaced old umi functionality with UMIR3

Pull Request - State: closed - Opened by Gerbenvandervries 11 months ago

#104 - updated the header and footer

Pull Request - State: closed - Opened by kdelange 12 months ago

#103 - Triggering CircleCI to test updated tests.

Pull Request - State: closed - Opened by pneerincx over 1 year ago

#102 - Fix/tests

Pull Request - State: closed - Opened by pneerincx over 1 year ago

#101 - test

Pull Request - State: closed - Opened by RoanKanninga over 1 year ago

#100 - wip

Pull Request - State: closed - Opened by RoanKanninga over 1 year ago

#99 - WIP

Pull Request - State: closed - Opened by RoanKanninga over 1 year ago

#98 - final fixes

Pull Request - State: closed - Opened by RoanKanninga over 1 year ago

#97 - get NGS_Demultiplexing working on betabarrel

Pull Request - State: closed - Opened by RoanKanninga almost 2 years ago

#96 - Fix indentation

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#95 - Fix indentation

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#94 - Remove Jenkinsfile

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#93 - removed Jenkinsfile and added CircleCI config

Pull Request - State: closed - Opened by marieke-bijlsma almost 2 years ago

#92 - get NGS_Demultiplexing working on betabarrel

Pull Request - State: closed - Opened by RoanKanninga about 2 years ago

#91 - Update Jenkinsfile

Pull Request - State: closed - Opened by marieke-bijlsma about 2 years ago

#90 - newer versions of tools

Pull Request - State: closed - Opened by RoanKanninga about 2 years ago

#89 - Update shellcheck.sh

Pull Request - State: closed - Opened by marieke-bijlsma over 2 years ago

#88 - Update indentationcheck.sh

Pull Request - State: closed - Opened by marieke-bijlsma over 2 years ago

#87 - Update indentationcheck.sh

Pull Request - State: closed - Opened by marieke-bijlsma over 2 years ago

#86 - updating versions + getting ready for wingedhelix

Pull Request - State: closed - Opened by RoanKanninga over 2 years ago

#85 - fixed bug where MiSeq is not generating a certain file

Pull Request - State: closed - Opened by RoanKanninga over 2 years ago

#84 - bcl2fastq step is producing warnings/errors on missing InternalSampleID column

Issue - State: open - Opened by RoanKanninga almost 3 years ago

#83 - added missing config file

Pull Request - State: closed - Opened by RoanKanninga almost 3 years ago

#82 - added readme describing pipeline steps and integration with NGS_Autom…

Pull Request - State: closed - Opened by Gerbenvandervries about 3 years ago

#82 - added readme describing pipeline steps and integration with NGS_Autom…

Pull Request - State: closed - Opened by Gerbenvandervries about 3 years ago

#81 - updated processInterop.sh

Pull Request - State: closed - Opened by kdelange over 3 years ago

#80 - added process Interop step to NGS_demultiplexing

Pull Request - State: closed - Opened by kdelange about 4 years ago

#80 - added process Interop step to NGS_demultiplexing

Pull Request - State: closed - Opened by kdelange about 4 years ago

#79 - added RunCompletionStatus.xml to the rawdata folder => will be copied…

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#79 - added RunCompletionStatus.xml to the rawdata folder => will be copied…

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#78 - moved copying Info folder from deprecated protocol

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#78 - moved copying Info folder from deprecated protocol

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#77 - removed unused protocol

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#77 - removed unused protocol

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#76 - removed part of the track and trace code

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#76 - removed part of the track and trace code

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#75 - renaming array since it was already in use by another part of the code

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#75 - renaming array since it was already in use by another part of the code

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#74 - barcode word barcode1, barcode_combined word barcode

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago - 3 comments