Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / molgenis/ngs_automated issues and pull requests

#99 - added demultiplexing finished check

Pull Request - State: closed - Opened by RoanKanninga about 6 years ago

#98 - Bugfixes for Chaperone.

Pull Request - State: closed - Opened by pneerincx about 6 years ago - 1 comment

#96 - new path to logs folder

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#95 - demultiplexing.finished is updated in Demultiplexing pipeline

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#94 - removing hardcoded version of DNA and RNA

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#93 - added chaperone config

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#92 - Change lockfile logic.

Issue - State: open - Opened by pneerincx over 6 years ago

#90 - fixing indentation

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#89 - Cleanup: Remove unused files.

Pull Request - State: closed - Opened by pneerincx over 6 years ago

#88 - added track and trace functionality when all data is copied to prm

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#87 - Fix group permissions for rsync.

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#86 - Small improvements for processing GenomeScan data.

Pull Request - State: closed - Opened by pneerincx over 6 years ago

#85 - Improved robustness for proccessing GenomeScan batches.

Pull Request - State: closed - Opened by pneerincx over 6 years ago

#84 - Minor bug fixes for configs/templates.

Pull Request - State: closed - Opened by pneerincx over 6 years ago

#81 - Procedure to check GS samplesheets is band aid solution

Issue - State: closed - Opened by pneerincx over 6 years ago - 1 comment

#80 - final version of demultiplexing + indentation fix

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#79 - added demultiplexing part

Pull Request - State: closed - Opened by RoanKanninga over 6 years ago

#78 - fix scripts permissions

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#77 - demultiplex dir stucture

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#76 - bugfix regex fastq names

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#75 - changed wrong groupname

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#74 - new group, extra return

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#73 - First version of automated GS sample processing for GD.

Pull Request - State: closed - Opened by Gerbenvandervries over 6 years ago

#72 - Fixed erroneous chmod syntax for rsync commands.

Pull Request - State: closed - Opened by pneerincx over 6 years ago

#68 - added gendercheckfailed option

Pull Request - State: closed - Opened by RoanKanninga almost 7 years ago

#66 - moved the mkdir further downstream

Pull Request - State: closed - Opened by RoanKanninga almost 7 years ago

#65 - Skip pipeline option

Pull Request - State: closed - Opened by Gerbenvandervries almost 7 years ago

#63 - added logging when submitting the pipeline fails

Pull Request - State: closed - Opened by RoanKanninga almost 7 years ago

#62 - added folder rsyncing (INFO directory should be copied too)

Pull Request - State: closed - Opened by RoanKanninga almost 7 years ago

#61 - ateambot user fix

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago

#60 - Bugfix for "logname: no login name" error.

Pull Request - State: closed - Opened by pneerincx about 7 years ago

#59 - missing ${3} for sampleType

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago

#58 - Autodetect sampleType, for trace and trace

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago - 1 comment

#57 - group, and rna version update

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago

#56 - Cosmetics.

Pull Request - State: closed - Opened by pneerincx about 7 years ago

#55 - small fix

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#54 - bugfix

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#53 - changed logs directory from tmp to prm

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#52 - swapped prm locations

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#51 - last bugfixes

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#50 - Improved syntax for printf statements

Pull Request - State: closed - Opened by pneerincx about 7 years ago

#49 - url fix

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago

#48 - Bug fixes for control files.

Pull Request - State: closed - Opened by pneerincx about 7 years ago

#47 - Various bug fixes and improved sample sheet management.

Pull Request - State: closed - Opened by pneerincx about 7 years ago

#46 - small bugfixes

Pull Request - State: closed - Opened by Gerbenvandervries about 7 years ago

#45 - Major refactoring

Pull Request - State: closed - Opened by pneerincx about 7 years ago

#44 - trying new way of running the projects

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#43 - removed stupid exit 1

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#42 - fix tnt issue + fix copyRawToPrm issue

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#41 - fixing upload + updated NGS_DNA to 3.4.3

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#40 - fix uploading for tnt

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#38 - fixes in startPipeline script + changed prm for leucine-zipper

Pull Request - State: closed - Opened by RoanKanninga about 7 years ago

#37 - bugfixes

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#36 - added missing sourcing of gattaca config file

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#35 - added track n trace commands + removing .finished.cleaned

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#34 - added cleanup script

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#33 - changed path of generate_template

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#31 - 2.x

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#30 - Minor changes + new version NGS_DNA

Pull Request - State: closed - Opened by marieke-bijlsma over 7 years ago

#29 - Improvements for startPipeline

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#28 - Lot's of updates for 2.x (work in progress)

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#27 - removed staging step + updated startPipeline

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#26 - Refactored mailError and pipelineFinished scripts

Pull Request - State: closed - Opened by marieke-bijlsma over 7 years ago

#25 - first new version copyRawDataToPrm.sh

Pull Request - State: closed - Opened by Gerbenvandervries over 7 years ago

#24 - created script that stages Prm data to tmp + starting pipeline

Pull Request - State: closed - Opened by RoanKanninga over 7 years ago

#22 - 2.x

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#21 - 2.x

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#20 - Bug fixes and minor improvements after testing 2.x

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#19 - Work in progress for 2.x

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#18 - Removed domain from hostnames used in variables and config file names.

Pull Request - State: closed - Opened by pneerincx over 7 years ago

#15 - dataCopiedToCluster file missing

Issue - State: closed - Opened by Gerbenvandervries over 7 years ago - 2 comments

#13 - updated NGS_DNA to 3.3.3

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#12 - not sending email while testing/validating pipeline

Issue - State: closed - Opened by RoanKanninga almost 8 years ago - 1 comment

#10 - fixing multiple bugs

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#9 - small tweaks

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#8 - fixing generate template

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#7 - update NGS_DNA version

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#6 - add trapped info for copyProjectData

Pull Request - State: closed - Opened by RoanKanninga almost 8 years ago

#5 - Added RNA part

Pull Request - State: closed - Opened by RoanKanninga about 8 years ago

#4 - update to NGS_DNA-3.2.6

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago

#3 - Minor fixes.

Pull Request - State: closed - Opened by pneerincx over 8 years ago

#1 - first commit in own repo

Pull Request - State: closed - Opened by RoanKanninga over 8 years ago