Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / molgenis/molgenis-py-bbmri-eric issues and pull requests

#106 - feat: add new categories

Pull Request - State: closed - Opened by dtroelofsprins 7 months ago

#105 - chore: add molgenis-jenkins user to git config

Pull Request - State: closed - Opened by dtroelofsprins 8 months ago

#104 - chore: update git config

Pull Request - State: closed - Opened by dtroelofsprins 8 months ago

#103 - chore: remove config step

Pull Request - State: closed - Opened by dtroelofsprins 8 months ago

#102 - fix: get git push to work

Pull Request - State: closed - Opened by dtroelofsprins 8 months ago

#101 - feat: get staged and not the published data from an external server

Pull Request - State: closed - Opened by dtroelofsprins 8 months ago - 1 comment

#100 - chore: setup circleci build

Pull Request - State: closed - Opened by dtroelofsprins 8 months ago - 1 comment

#99 - feat: get staging data from external servers iso published data

Pull Request - State: closed - Opened by dtroelofsprins 9 months ago - 1 comment

#98 - Fix issue #68, deleting biobanks with no PID fails

Pull Request - State: closed - Opened by dtroelofsprins 9 months ago - 2 comments

#97 - feat: Ability to add/remove WITHDRAWN status to PIDs

Pull Request - State: closed - Opened by dtroelofsprins 10 months ago - 1 comment

#96 - fix: Solve bug in derivation of paediatric and paediatric included ca…

Pull Request - State: closed - Opened by dtroelofsprins 10 months ago - 1 comment

#95 - feat: change matching_attrs to exact_ and ntbt_mapping

Pull Request - State: closed - Opened by dtroelofsprins 10 months ago - 1 comment

#94 - chore: fix RSQL "and" query

Pull Request - State: closed - Opened by dtroelofsprins 11 months ago - 1 comment

#93 - feat: RD-category also based on collection_type = RD

Pull Request - State: closed - Opened by dtroelofsprins 11 months ago - 1 comment

#92 - fix: also known in should be emptied after networks and not before

Pull Request - State: closed - Opened by dtroelofsprins about 1 year ago - 2 comments

#91 - chore(deps): bump certifi from 2022.9.24 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#90 - chore(deps): bump urllib3 from 1.25.11 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#89 - chore(deps): bump certifi from 2022.9.24 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#88 - chore(deps): bump future from 0.18.2 to 0.18.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#87 - chore: Remove check on multiple age_units as datatype is categorical now

Pull Request - State: closed - Opened by dtroelofsprins about 1 year ago - 1 comment

#86 - feat: map matching disease codes to categories

Pull Request - State: closed - Opened by dtroelofsprins about 1 year ago - 2 comments

#85 - feat: include publishing of Facts

Pull Request - State: closed - Opened by dtroelofsprins over 1 year ago - 2 comments

#84 - feat: add scripts to sync PIDs and Qualities on external servers

Pull Request - State: closed - Opened by dtroelofsprins over 1 year ago - 1 comment

#83 - Ping_fdp, and CRC import scripts and hook for bbmri-testnn added to repo

Pull Request - State: closed - Opened by dtroelofsprins over 1 year ago - 2 comments

#82 - Add withdrawn column and update hook script

Pull Request - State: closed - Opened by dtroelofsprins over 1 year ago - 2 comments

#81 - Hyperlink validation added

Pull Request - State: closed - Opened by dtroelofsprins almost 2 years ago - 2 comments

#80 - Remove methods that are moved to molgenis-py-client and refine warnings

Pull Request - State: closed - Opened by dtroelofsprins almost 2 years ago - 3 comments

#79 - BBMRI model changes part1 (a.o. also_known_in and head info to persons)

Pull Request - State: closed - Opened by dtroelofsprins almost 2 years ago - 3 comments

#78 - feat: Add the update of Google Analytics settings to hook.py

Pull Request - State: closed - Opened by dtroelofsprins almost 2 years ago - 2 comments

#77 - Migrate to Python 3.10

Pull Request - State: closed - Opened by tommydeboer almost 2 years ago - 1 comment

#76 - Test build

Pull Request - State: closed - Opened by tommydeboer almost 2 years ago

#75 - Add the update of Google Analytics settings to hook.py

Pull Request - State: closed - Opened by dtroelofsprins almost 2 years ago - 1 comment

#74 - Add method to fill the biobank_label of the collection

Pull Request - State: closed - Opened by dtroelofsprins about 2 years ago - 1 comment

#73 - Automatically fill the 'combined quality' field in collections during publishing

Pull Request - State: closed - Opened by dtroelofsprins about 2 years ago - 1 comment

#72 - Qualities synchronisation script for German Directory

Pull Request - State: closed - Opened by dtroelofsprins about 2 years ago - 1 comment

#71 - fix: script crashes when successEmail or failureEmail are empty

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#70 - Collection categories

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#69 - Merge 'covid19biobank' column into 'capabilities'

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#68 - NoOpPidService => deleting a biobank fails

Issue - State: closed - Opened by dtroelofsprins over 2 years ago
Labels: bug

#67 - Publisher is still called if there are no nodes to publish

Issue - State: open - Opened by tommydeboer over 2 years ago
Labels: enhancement

#66 - Post cross-restore hook

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#65 - Publish all nodes at once

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#64 - fix: initial pid assignment script url

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#63 - chore: switch to pod template repository

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#62 - Fix issue #61, import of NL data fails due to self-referencing columns

Pull Request - State: closed - Opened by dtroelofsprins over 2 years ago - 2 comments

#61 - NL data can not be imported anymore

Issue - State: closed - Opened by dtroelofsprins over 2 years ago - 1 comment
Labels: bug

#60 - Some PyHandle exceptions are not handled gracefully

Issue - State: open - Opened by tommydeboer over 2 years ago
Labels: bug

#59 - Adds step to fill `combined_network` field

Pull Request - State: closed - Opened by svituz over 2 years ago - 4 comments

#58 - Fill hidden_network field of collection

Pull Request - State: closed - Opened by svituz over 2 years ago

#57 - feat: prefix PIDs with "1."

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#56 - refactor: rename Enricher to Transformer

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#55 - feat: Feature toggle for the PIDs

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#54 - fix: add server_url to doc

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#53 - Feat: PID URLs are based on config parameter

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#52 - Fix: Set correct node code for EU rows

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#51 - doc: move readme code to example.py

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 1 comment

#50 - fix: change pid format

Pull Request - State: closed - Opened by tommydeboer over 2 years ago - 2 comments

#49 - Fix #35 & Fix #41: Issues around EU persons and networks

Pull Request - State: closed - Opened by tommydeboer almost 3 years ago - 2 comments

#48 - Fix PidService docstring

Pull Request - State: closed - Opened by tommydeboer almost 3 years ago - 1 comment

#47 - fix: coverage reports

Pull Request - State: closed - Opened by tommydeboer almost 3 years ago - 1 comment

#46 - Feat: manage biobank PIDs

Pull Request - State: closed - Opened by tommydeboer almost 3 years ago - 7 comments

#45 - Fix #43 Only remove prefix if ID starts with prefix during validation

Pull Request - State: closed - Opened by tommydeboer almost 3 years ago - 2 comments
Labels: hacktoberfest-accepted

#44 - Fix #42 Don't allow @ and . in identifiers

Pull Request - State: closed - Opened by tommydeboer almost 3 years ago - 2 comments
Labels: hacktoberfest-accepted

#43 - Current ID validation results in false-positive invalid IDs

Issue - State: closed - Opened by dtroelofsprins almost 3 years ago
Labels: bug

#42 - ID validation should not allow @ and .

Issue - State: closed - Opened by dtroelofsprins almost 3 years ago
Labels: enhancement

#41 - Issues around node EU

Issue - State: closed - Opened by tommydeboer about 3 years ago
Labels: bug

#40 - Fix #38: remove one-to-manys when adding, not when updating

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 3 comments
Labels: hacktoberfest-accepted

#38 - Parent and sub collections are empty in the ERIC collections table

Issue - State: closed - Opened by dtroelofsprins about 3 years ago - 2 comments
Labels: bug

#37 - Changes to solve the not deleting rows bug #36

Pull Request - State: closed - Opened by dtroelofsprins about 3 years ago - 1 comment

#36 - Deleted rows from a staging area are not deleted from the published ERIC tables

Issue - State: closed - Opened by dtroelofsprins about 3 years ago - 1 comment
Labels: bug

#35 - EU networks give error in National Node check

Issue - State: closed - Opened by jelmerveen about 3 years ago

#34 - Fixes critical error when running on Python 3.6 (or lower)

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 1 comment

#33 - require development in 3.6

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 1 comment

#32 - Fix Python 3.6 compatibility

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 1 comment

#31 - Fix global error handling

Pull Request - State: closed - Opened by tommydeboer about 3 years ago

#30 - fix: changelog version

Pull Request - State: closed - Opened by tommydeboer about 3 years ago

#29 - feat: add methods to get single node

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 1 comment

#28 - Expand readme

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 2 comments

#27 - Multiple fixes and unit tests

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 3 comments

#26 - Sonar coverage configuration

Pull Request - State: closed - Opened by tommydeboer about 3 years ago

#25 - Add unit tests

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 2 comments

#24 - Add usage info to readme

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 2 comments

#23 - Use national nodes table

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 2 comments

#22 - Add docstrings

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 1 comment

#21 - Output & error handling

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 2 comments

#20 - Deletion & Enrichment

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 3 comments

#19 - Refactoring & simplify validation

Pull Request - State: closed - Opened by tommydeboer about 3 years ago - 2 comments

#18 - Add Eric object as entry point and add stubs for new publishing flow

Pull Request - State: closed - Opened by tommydeboer over 3 years ago - 1 comment

#17 - Run pre-commit in Jenkins buidls

Pull Request - State: closed - Opened by tommydeboer over 3 years ago - 2 comments

#16 - fix: actually store new version from shell script

Pull Request - State: closed - Opened by tommydeboer over 3 years ago

#15 - Put version bumping in separate file

Pull Request - State: closed - Opened by tommydeboer over 3 years ago

#14 - Undo formatting changes made by bumpversion & add comments

Pull Request - State: closed - Opened by tommydeboer over 3 years ago

#13 - Improve release flow

Pull Request - State: closed - Opened by tommydeboer over 3 years ago

#12 - Fix issues in release flow

Pull Request - State: closed - Opened by tommydeboer over 3 years ago

#11 - Add TestPyPi to release flow

Pull Request - State: closed - Opened by tommydeboer over 3 years ago - 1 comment

#10 - chore: migrated, and linted, initial sync script files

Pull Request - State: closed - Opened by jelmerveen over 3 years ago - 1 comment

#9 - Fix: use username/password when doing tox publish

Pull Request - State: closed - Opened by tommydeboer over 3 years ago

#8 - Add pull request checklist

Pull Request - State: closed - Opened by tommydeboer over 3 years ago - 1 comment