molgenis/convading issues and pull requests

#51 - error when running StartWithMatchScore step

Issue - State: open - Opened by lmanchon over 1 year ago

#51 - error when running StartWithMatchScore step

Issue - State: open - Opened by lmanchon over 1 year ago

#50 - Coverage files

Issue - State: closed - Opened by Tin-26 almost 2 years ago

#50 - Coverage files

Issue - State: closed - Opened by Tin-26 almost 2 years ago

#49 - Confusion regarding "StartWithMatchScore" step, inputDir vs controlsDir

Issue - State: closed - Opened by npatel-ah over 3 years ago - 2 comments

#49 - Confusion regarding "StartWithMatchScore" step, inputDir vs controlsDir

Issue - State: closed - Opened by npatel-ah over 3 years ago - 2 comments

#48 - Error installing Statistics::Normality

Issue - State: open - Opened by bdolmo over 4 years ago - 1 comment

#47 - Multi Threads

Issue - State: open - Opened by SouzaBB over 4 years ago - 1 comment

#46 - what kind of files should be put in controlsDIr?

Issue - State: open - Opened by leovam over 4 years ago - 1 comment

#46 - what kind of files should be put in controlsDIr?

Issue - State: open - Opened by leovam over 4 years ago - 1 comment

#45 - Error running convading: Incorrect BED file format, please check your BED file before processing

Issue - State: open - Opened by lakhujanivijay almost 5 years ago - 9 comments

#45 - Error running convading: Incorrect BED file format, please check your BED file before processing

Issue - State: open - Opened by lakhujanivijay almost 5 years ago - 9 comments

#44 - Missing HOM_DEL and HOM_DUP in longlist

Issue - State: open - Opened by sveint about 5 years ago

#44 - Missing HOM_DEL and HOM_DUP in longlist

Issue - State: open - Opened by sveint about 5 years ago

#43 - Update LICENSE

Pull Request - State: closed - Opened by dennishendriksen over 5 years ago

#43 - Update LICENSE

Pull Request - State: closed - Opened by dennishendriksen over 5 years ago

#42 - "controlsDir" not used?

Issue - State: open - Opened by przemekl over 5 years ago - 1 comment

#41 - See commit history

Pull Request - State: open - Opened by mmterpstra almost 6 years ago - 2 comments

#40 - Fixed chromosome comparison in createNormalizedCoverageFiles()

Pull Request - State: open - Opened by ryim almost 6 years ago - 3 comments

#40 - Fixed chromosome comparison in createNormalizedCoverageFiles()

Pull Request - State: open - Opened by ryim almost 6 years ago - 3 comments

#39 - Resolved #28

Pull Request - State: open - Opened by creggian about 6 years ago

#39 - Resolved #28

Pull Request - State: open - Opened by creggian about 6 years ago

#38 - Chromosome name style in BED file does not correspond to naming style in BAM file

Issue - State: open - Opened by Ismaelfermir over 6 years ago - 11 comments

#37 - Consider using mosdepth instead of samtools depth

Issue - State: open - Opened by mmterpstra over 7 years ago - 1 comment

#36 - Check $? for execution with system or backticks

Issue - State: open - Opened by mmterpstra over 7 years ago

#35 - Several improvements to CoNVaDING

Pull Request - State: closed - Opened by duartemolha over 7 years ago - 12 comments

#35 - Several improvements to CoNVaDING

Pull Request - State: closed - Opened by duartemolha over 7 years ago - 12 comments

#34 - Several Improvements to the CoNvading software

Pull Request - State: closed - Opened by duartemolha over 7 years ago - 3 comments

#34 - Several Improvements to the CoNvading software

Pull Request - State: closed - Opened by duartemolha over 7 years ago - 3 comments

#33 - uninitialised values in StartWithBestScore script

Issue - State: open - Opened by duartemolha over 7 years ago

#32 - unused sub targetAudit in code?

Issue - State: open - Opened by duartemolha over 7 years ago - 2 comments

#32 - unused sub targetAudit in code?

Issue - State: open - Opened by duartemolha over 7 years ago - 2 comments

#31 - Update CoNVaDING.pl for parsing bam headers

Pull Request - State: open - Opened by rjsicko over 7 years ago

#31 - Update CoNVaDING.pl for parsing bam headers

Pull Request - State: open - Opened by rjsicko over 7 years ago

#30 - StartWithBam - Uncaught exception

Issue - State: closed - Opened by rjsicko over 7 years ago - 9 comments

#30 - StartWithBam - Uncaught exception

Issue - State: closed - Opened by rjsicko over 7 years ago - 9 comments

#29 - regex incorrect

Issue - State: open - Opened by melferink over 7 years ago

#29 - regex incorrect

Issue - State: open - Opened by melferink over 7 years ago

#28 - Awk error while running CoNVaDING

Issue - State: open - Opened by pradyumnasagar almost 8 years ago - 8 comments

#28 - Awk error while running CoNVaDING

Issue - State: open - Opened by pradyumnasagar almost 8 years ago - 8 comments

#27 - Updated documentation for version 1.2.1

Pull Request - State: closed - Opened by ljohansson almost 8 years ago

#26 - Fixed bug introduced in previous version

Pull Request - State: closed - Opened by freerkvandijk almost 8 years ago

#25 - Removed HOM del or dup part of code, contains bug which needs to be f…

Pull Request - State: closed - Opened by freerkvandijk almost 8 years ago

#24 - Argument parsing warning

Issue - State: open - Opened by brendanofallon almost 8 years ago - 4 comments

#23 - Updated links to documentation in readme.md

Pull Request - State: closed - Opened by freerkvandijk almost 8 years ago

#22 - Added an index column to the documentation

Pull Request - State: closed - Opened by ljohansson almost 8 years ago

#21 - Added GitBook for CoNVaDING

Pull Request - State: closed - Opened by mark-de-haan almost 8 years ago

#20 - Updates and fixed branch Version 1.2.0

Pull Request - State: closed - Opened by freerkvandijk almost 8 years ago

#19 - Error with single-letter gene names

Issue - State: open - Opened by brendanofallon almost 8 years ago - 1 comment

#18 - Feature Request: input bam list file instead of folders

Issue - State: open - Opened by duartemolha over 8 years ago - 1 comment

#17 - Better handling of sex chromossomes

Issue - State: open - Opened by duartemolha over 8 years ago - 2 comments

#16 - More user friendly error handling, file not found

Issue - State: open - Opened by RoanKanninga over 8 years ago
Labels: enhancement

#15 - Added Test dataset

Pull Request - State: closed - Opened by ljohansson almost 9 years ago