Ecosyste.ms: Issues

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GitHub / molgenis/concordancecheck issues and pull requests

#40 - improve rsync command

Pull Request - State: open - Opened by Gerbenvandervries about 1 month ago

#39 - made isilonmount location dependent on chaparone machine

Pull Request - State: closed - Opened by Gerbenvandervries 2 months ago

#37 - updated automation scripts, and bugfix fixed filenames.

Pull Request - State: closed - Opened by Gerbenvandervries 7 months ago

#35 - typo

Pull Request - State: closed - Opened by Gerbenvandervries 8 months ago

#34 - Various small fixes for bin/ConcordanceCheck.sh

Pull Request - State: closed - Opened by pneerincx 11 months ago

#33 - first version of nf pipeline

Pull Request - State: closed - Opened by Gerbenvandervries 11 months ago

#32 - fix rerun of ngs sample

Pull Request - State: closed - Opened by RoanKanninga about 1 year ago

#31 - fixing concordancecheck

Pull Request - State: closed - Opened by RoanKanninga about 1 year ago

#29 - let parseSamplesheets also search in Gavin folder for vcf files

Pull Request - State: closed - Opened by RoanKanninga about 1 year ago

#28 - fix issue where array data is not available (yet)

Pull Request - State: closed - Opened by RoanKanninga about 1 year ago

#27 - smal fix, sample id in the .sample file

Pull Request - State: closed - Opened by kdelange over 1 year ago

#26 - fixing location from where sbatch is running

Pull Request - State: closed - Opened by RoanKanninga over 1 year ago

#25 - small changes for notification script

Pull Request - State: closed - Opened by BenjaminsM over 1 year ago

#24 - updated toolversions for concordancecheck

Pull Request - State: closed - Opened by BenjaminsM over 1 year ago

#23 - small update to get copying the results from tmp to prm working

Pull Request - State: closed - Opened by BenjaminsM over 1 year ago - 1 comment

#22 - Bugfixes for switching from Jenkins to CircleCI.

Pull Request - State: closed - Opened by pneerincx over 1 year ago

#21 - Changes from Roan for winged helix and circleci instead of jenkins

Pull Request - State: closed - Opened by BenjaminsM over 1 year ago

#20 - make it wingedhelix proof

Pull Request - State: closed - Opened by RoanKanninga about 2 years ago

#18 - removing dos/windows line ends and replace them with unix ones

Pull Request - State: closed - Opened by RoanKanninga about 3 years ago

#17 - essential bugfixes

Pull Request - State: closed - Opened by RoanKanninga over 3 years ago

#16 - changed the name of the sample in the .sample file

Pull Request - State: closed - Opened by RoanKanninga almost 4 years ago

#14 - replacing old way of processing concordance samplesheets

Pull Request - State: closed - Opened by RoanKanninga about 4 years ago

#13 - Empty result files without any error.

Issue - State: open - Opened by pneerincx about 4 years ago

#12 - bugfix

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#11 - fix barcode is empty issue

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#10 - Fixed the last ShellCheck issues.

Pull Request - State: closed - Opened by pneerincx over 4 years ago

#9 - fixed some shellcheck warnings

Pull Request - State: closed - Opened by kdelange over 4 years ago

#8 - small update slurm header jobs

Pull Request - State: closed - Opened by kdelange over 4 years ago

#7 - fixing when there is no automated .started file created

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#6 - added set -eu to concordance jobs

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#5 - fixing shellchecks + looping over samplesheets limited to only the Sa…

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago - 1 comment

#4 - trigger build

Pull Request - State: closed - Opened by marieke-bijlsma over 4 years ago

#3 - cleanup script voor tmp

Pull Request - State: closed - Opened by kdelange over 4 years ago

#2 - added new ConcordanceCheck updates from the NGS_Automated repo

Pull Request - State: closed - Opened by RoanKanninga over 4 years ago

#1 - Scripts from the NGS_Automated transferred to this repo

Pull Request - State: closed - Opened by kdelange over 4 years ago