Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mojaveazure/loomr issues and pull requests

#80 - subsetting loom file

Issue - State: open - Opened by menage95 about 1 year ago

#80 - subsetting loom file

Issue - State: open - Opened by menage95 about 1 year ago

#78 - create() ignores do.transpose=FALSE

Issue - State: open - Opened by smgoggin10 almost 2 years ago

#78 - create() ignores do.transpose=FALSE

Issue - State: open - Opened by smgoggin10 almost 2 years ago

#76 - get.attribute.df(): unused argument (attribute.names = )

Issue - State: closed - Opened by jasminelmah over 3 years ago - 2 comments

#76 - get.attribute.df(): unused argument (attribute.names = )

Issue - State: closed - Opened by jasminelmah over 3 years ago - 2 comments

#75 - Conversion from Seurat to loom

Issue - State: open - Opened by Jeff87075 over 3 years ago

#75 - Conversion from Seurat to loom

Issue - State: open - Opened by Jeff87075 over 3 years ago

#74 - how to merge 6 loom file?

Issue - State: open - Opened by dmsalsgh97 over 3 years ago - 2 comments

#74 - how to merge 6 loom file?

Issue - State: open - Opened by dmsalsgh97 over 3 years ago - 2 comments

#73 - Compatibility with R version 4.0.3

Issue - State: open - Opened by nmazare over 3 years ago

#73 - Compatibility with R version 4.0.3

Issue - State: open - Opened by nmazare over 3 years ago

#72 - Does package support storing info in global attributes?

Issue - State: open - Opened by DanSchnell over 3 years ago

#71 - How to save/export loom file

Issue - State: closed - Opened by DanSchnell over 3 years ago - 1 comment

#70 - LoomR doesn't seem to work

Issue - State: open - Opened by billadelonge over 3 years ago - 3 comments

#70 - LoomR doesn't seem to work

Issue - State: open - Opened by billadelonge over 3 years ago - 3 comments

#69 - saving a loomR file

Issue - State: open - Opened by rojinsafavi almost 4 years ago

#69 - saving a loomR file

Issue - State: open - Opened by rojinsafavi almost 4 years ago

#68 - Cannot open loom file

Issue - State: open - Opened by yonatans2 almost 4 years ago - 3 comments

#68 - Cannot open loom file

Issue - State: open - Opened by yonatans2 almost 4 years ago - 3 comments

#67 - get.attribute.df() - how to handle duplicate CellIDs?

Issue - State: open - Opened by reliscu about 4 years ago - 1 comment

#67 - get.attribute.df() - how to handle duplicate CellIDs?

Issue - State: open - Opened by reliscu about 4 years ago - 1 comment

#66 - Error in (function () : id is invalid

Issue - State: open - Opened by SebRW over 4 years ago

#66 - Error in (function () : id is invalid

Issue - State: open - Opened by SebRW over 4 years ago

#65 - Cannot convert Seurat object to loom

Issue - State: open - Opened by jamiexie over 4 years ago - 2 comments

#65 - Cannot convert Seurat object to loom

Issue - State: open - Opened by jamiexie over 4 years ago - 2 comments

#64 - Package ‘R6’ version 2.4.0 cannot be unloaded:

Issue - State: closed - Opened by brianpenghe over 4 years ago

#64 - Package ‘R6’ version 2.4.0 cannot be unloaded:

Issue - State: closed - Opened by brianpenghe over 4 years ago

#63 - Combine two loom files

Issue - State: open - Opened by MartaBenegas over 4 years ago

#63 - Combine two loom files

Issue - State: open - Opened by MartaBenegas over 4 years ago

#62 - Raw Data not Present in Loom File

Issue - State: open - Opened by iSinedeus over 4 years ago

#62 - Raw Data not Present in Loom File

Issue - State: open - Opened by iSinedeus over 4 years ago

#61 - Loom file outdated version for loompy

Issue - State: open - Opened by daccachejoe over 4 years ago - 2 comments

#61 - Loom file outdated version for loompy

Issue - State: open - Opened by daccachejoe over 4 years ago - 2 comments

#60 - LoomR tutorial doesn't seem to work.

Issue - State: open - Opened by alexandruioanvoda over 4 years ago - 4 comments

#60 - LoomR tutorial doesn't seem to work.

Issue - State: open - Opened by alexandruioanvoda over 4 years ago - 4 comments

#58 - Not working with Loompy v3

Issue - State: open - Opened by cbravo93 over 4 years ago - 3 comments

#58 - Not working with Loompy v3

Issue - State: open - Opened by cbravo93 over 4 years ago - 3 comments

#57 - Issues With loomR and Seurat with loom

Issue - State: open - Opened by lololiam almost 5 years ago - 1 comment

#55 - There can only be 5 groups in the loom file: ...

Issue - State: open - Opened by tanpuekai almost 5 years ago - 5 comments

#55 - There can only be 5 groups in the loom file: ...

Issue - State: open - Opened by tanpuekai almost 5 years ago - 5 comments

#54 - subset giving HDF5-API Errors

Issue - State: open - Opened by mliiv almost 5 years ago - 4 comments

#54 - subset giving HDF5-API Errors

Issue - State: open - Opened by mliiv almost 5 years ago - 4 comments

#53 - Troubles installing loomR

Issue - State: closed - Opened by Olivia117 about 5 years ago

#53 - Troubles installing loomR

Issue - State: closed - Opened by Olivia117 about 5 years ago

#52 - System2 error during installation

Issue - State: open - Opened by GBeattie about 5 years ago

#52 - System2 error during installation

Issue - State: open - Opened by GBeattie about 5 years ago

#51 - can't install loomR (non-zero exit status or not available for R v3.6.0)

Issue - State: open - Opened by w2niva about 5 years ago - 1 comment

#51 - can't install loomR (non-zero exit status or not available for R v3.6.0)

Issue - State: open - Opened by w2niva about 5 years ago - 1 comment

#50 - loomR save sparse matrix

Issue - State: open - Opened by ccshao about 5 years ago - 1 comment

#50 - loomR save sparse matrix

Issue - State: open - Opened by ccshao about 5 years ago - 1 comment

#47 - Error in creating loom file

Issue - State: open - Opened by SIGA-HIRI over 5 years ago

#47 - Error in creating loom file

Issue - State: open - Opened by SIGA-HIRI over 5 years ago

#46 - Error combining loom outputs from velocyto

Issue - State: closed - Opened by davisidarta over 5 years ago - 3 comments

#45 - variable length strings in metadata prevent opening loomR output in loompy

Issue - State: open - Opened by ekernf01 over 5 years ago - 1 comment

#45 - variable length strings in metadata prevent opening loomR output in loompy

Issue - State: open - Opened by ekernf01 over 5 years ago - 1 comment

#44 - var genes from Seurat3 object

Issue - State: closed - Opened by rmenafra over 5 years ago

#44 - var genes from Seurat3 object

Issue - State: closed - Opened by rmenafra over 5 years ago

#43 - DATA NOT CORRELATED WITH CLUSTERS

Issue - State: open - Opened by SaraVilla over 5 years ago

#43 - DATA NOT CORRELATED WITH CLUSTERS

Issue - State: open - Opened by SaraVilla over 5 years ago

#42 - ERROR: lazy loading failed for package 'loomR'

Issue - State: closed - Opened by SaraVilla over 5 years ago - 1 comment

#42 - ERROR: lazy loading failed for package 'loomR'

Issue - State: closed - Opened by SaraVilla over 5 years ago - 1 comment

#41 - HDF5-API Error when attempting to connect to loom file

Issue - State: closed - Opened by davisidarta over 5 years ago - 2 comments

#41 - HDF5-API Error when attempting to connect to loom file

Issue - State: closed - Opened by davisidarta over 5 years ago - 2 comments

#40 - Error when adding column attributes with NAs

Issue - State: open - Opened by NathanSkene over 5 years ago - 8 comments

#40 - Error when adding column attributes with NAs

Issue - State: open - Opened by NathanSkene over 5 years ago - 8 comments

#39 - Support for R 3.5+?

Issue - State: closed - Opened by zaczap over 5 years ago - 2 comments
Labels: unclear

#38 - row_attrs from create loom vs add.row.attribute

Issue - State: open - Opened by combiz over 5 years ago - 1 comment

#37 - Error combining loom files

Issue - State: closed - Opened by sarawaise over 5 years ago - 2 comments
Labels: bug

#37 - Error combining loom files

Issue - State: closed - Opened by sarawaise over 5 years ago - 2 comments
Labels: bug

#36 - Seurat to LoomR: Error in attributes[[i]] : subscript out of bounds

Issue - State: open - Opened by RobertAlpin over 5 years ago - 14 comments

#36 - Seurat to LoomR: Error in attributes[[i]] : subscript out of bounds

Issue - State: open - Opened by RobertAlpin over 5 years ago - 14 comments

#35 - how to convert loom file to seurat object?

Issue - State: closed - Opened by Sophia409 over 5 years ago - 4 comments

#35 - how to convert loom file to seurat object?

Issue - State: closed - Opened by Sophia409 over 5 years ago - 4 comments

#34 - failed to get metadata from loomR

Issue - State: closed - Opened by Sophia409 over 5 years ago - 5 comments

#34 - failed to get metadata from loomR

Issue - State: closed - Opened by Sophia409 over 5 years ago - 5 comments

#33 - col_attrs question

Issue - State: open - Opened by juliesawitzke over 5 years ago - 1 comment

#32 - how to merge loom file with my seurat object?help!!!

Issue - State: closed - Opened by Sophia409 over 5 years ago

#32 - how to merge loom file with my seurat object?help!!!

Issue - State: closed - Opened by Sophia409 over 5 years ago

#30 - failed to install hdf5r

Issue - State: closed - Opened by Sophia409 over 5 years ago - 1 comment

#30 - failed to install hdf5r

Issue - State: closed - Opened by Sophia409 over 5 years ago - 1 comment

#29 - failed to install loomR

Issue - State: closed - Opened by Sophia409 over 5 years ago - 4 comments

#29 - failed to install loomR

Issue - State: closed - Opened by Sophia409 over 5 years ago - 4 comments

#28 - Errors when combining loom files

Issue - State: open - Opened by chent5 over 5 years ago - 1 comment

#28 - Errors when combining loom files

Issue - State: open - Opened by chent5 over 5 years ago - 1 comment

#27 - fix `dtype object is not allowed` error message when loading loom files created by loomR

Pull Request - State: closed - Opened by sirusb almost 6 years ago - 1 comment