mobeets/gabormotionpulses issues and pull requests

#100 - different noise correlations for different directions

Issue - State: open - Opened by mobeets over 9 years ago

#99 - totally failed at pipeline to save .pdfs in matlab that interact nicely as linked files in illustrator

Issue - State: closed - Opened by jcbyts over 9 years ago - 2 comments

#98 - how do we see improvement in decoding with corrs in presence of bad noise-corrs?

Issue - State: open - Opened by mobeets over 9 years ago - 3 comments
Labels: question

#97 - difference between diaglinear and shuffle correction decoding?

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: question

#96 - other results with information-enhancing correlations?

Issue - State: open - Opened by mobeets over 9 years ago - 1 comment
Labels: question

#95 - shuffle when comparing all cells vs monkey

Issue - State: open - Opened by mobeets over 9 years ago - 3 comments

#94 - decoding stim using each neuron, all pairs

Issue - State: closed - Opened by mobeets over 9 years ago

#93 - choose dPrime threshold

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: data

#92 - correlation between dirstrength and residuals

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#91 - plotHyperflowMT red instead of gray?

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: bug, visualization

#90 - mention ignoring sessions where monkey's pctCorrect < 0.7

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: data

#89 - identify outliers in decoding pctImprove

Issue - State: closed - Opened by mobeets over 9 years ago

#88 - figure5 - decoding

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#87 - identify outliers in pairwise YresAR corr

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#86 - figure4 - CP + noisecorr

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#85 - figure3 overlay example cells

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#84 - figure3 methods figure code

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#83 - r-sq on frozen trials

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: wontfix

#82 - refit with all cells

Issue - State: closed - Opened by mobeets over 9 years ago - 5 comments
Labels: fits

#81 - remove high firing rate cells

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: data

#80 - throw out low ntrials

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: data

#79 - some work on figure 2

Pull Request - State: closed - Opened by jcbyts over 9 years ago

#78 - User flexibility

Pull Request - State: closed - Opened by jcbyts over 9 years ago - 1 comment

#77 - history correction

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: fits

#76 - sample RFs for ML vs Flat vs ASD

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: visualization

#75 - rfDist confirm

Issue - State: closed - Opened by mobeets over 9 years ago

#74 - sample cell for comparing actual spikes vs predicted

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#73 - figures: fitting quality

Issue - State: closed - Opened by mobeets over 9 years ago - 3 comments
Labels: visualization

#72 - fit space only, compare

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: fits

#71 - decoding choice using neurons

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#70 - CP comparison

Issue - State: open - Opened by mobeets over 9 years ago

#69 - slow trends in spike counts

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#68 - LIP RFs split by rampiness

Issue - State: closed - Opened by mobeets over 9 years ago

#67 - decision RF fits restricted to positive values

Issue - State: open - Opened by mobeets over 9 years ago - 2 comments

#66 - fix targPref on some cells

Issue - State: closed - Opened by mobeets over 9 years ago

#65 - kernel plot size issues

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#64 - idiosyncratic decision fits compared with LIP

Issue - State: closed - Opened by mobeets over 9 years ago

#63 - to do

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#62 - logistic regression intercept term?

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: bug, wontfix

#61 - clean-up fitting code

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: enhancement, fits

#60 - use ASD for hyperflow and delayedsaccade maps

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: enhancement, wontfix, fits

#59 - MT cell matches for figures

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: writing

#58 - better quiver arrows

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: visualization

#57 - LIP results

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: writing

#56 - write MT results

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: writing

#55 - plot kernel: turn fixation point and targets on

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#54 - new saccade overlay plot

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization

#53 - fit spatial kernels only

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: fits

#52 - compute final counts of fits

Issue - State: open - Opened by mobeets over 9 years ago - 4 comments
Labels: fits

#51 - re-fit decision with pctIncorrectScore as scoreFcn

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: fits

#50 - selective index vs. ML instead of rank-approx

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#49 - the cause of flipping selectivity?

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments

#48 - svd-based separability index definition?

Issue - State: closed - Opened by mobeets over 9 years ago - 3 comments
Labels: question

#47 - filtering for "selective" fits

Issue - State: closed - Opened by mobeets over 9 years ago

#46 - rejecting cells with unstable firing rate

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: wontfix

#45 - run fits over and over again...

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: question

#44 - probit regression (instead of logistic)

Issue - State: closed - Opened by mobeets over 9 years ago - 10 comments
Labels: wontfix

#43 - laplace approximation?

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: question, wontfix

#42 - LIP: identify cells with targ-in RF vs. dots-in RF

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: question

#41 - k-fold once hypers are chosen

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: enhancement

#40 - Bilinear with evi-opt

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment

#39 - label fits into a few classes

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: visualization, fits

#38 - methods: add figures to explain how ASD works

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: visualization, writing

#37 - adapt to fit cells using Pillow's ASD code

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: enhancement, question

#36 - pseudoRsq with llSat < ll

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: bug, question

#35 - fix ML overfitting

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: bug, fits

#34 - muCorr across separate development sets

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: wontfix, fits

#33 - assess min and max smoothing necessary

Issue - State: closed - Opened by mobeets over 9 years ago - 3 comments
Labels: question

#32 - ML rsq really that bad?

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: fits

#31 - compare CP calculations for ASD vs. classical model

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: enhancement, wontfix

#30 - write methods

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: writing

#29 - check out cells with high decisionCorrelation

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: wontfix, fits

#28 - flat decision fits?

Issue - State: closed - Opened by mobeets over 9 years ago - 10 comments
Labels: fits

#27 - assess model failures by looking at Y vs. Yh

Issue - State: closed - Opened by mobeets over 9 years ago - 5 comments
Labels: visualization

#26 - fit with poisson likelihood

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: wontfix

#25 - fit with poisson likelihood

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: wontfix, fits

#24 - try to measure Yneg and Ypos noise separately?

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: enhancement

#23 - Does Yneg correlate with pref choices given fixed Ypos?

Issue - State: closed - Opened by mobeets over 9 years ago - 4 comments
Labels: enhancement

#22 - filter out cells for overall spike rate over trials

Issue - State: closed - Opened by mobeets over 9 years ago - 7 comments
Labels: wontfix, data

#21 - try fitting with constraint that all weights must be positive

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: enhancement, wontfix, fits

#20 - 20130611-MT-7 might have incorrect targpref

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: bug, data

#19 - AUC calculation trade-offs suck

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: wontfix

#18 - bounds on CP

Issue - State: closed - Opened by mobeets over 9 years ago - 6 comments
Labels: visualization

#17 - update plot.psthByEvent

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: enhancement

#16 - better summaries

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: enhancement

#15 - LIP cells with CP < 0.5

Issue - State: closed - Opened by mobeets over 9 years ago - 5 comments
Labels: bug, question

#14 - CP for each mode of bimodal RFs

Issue - State: closed - Opened by mobeets over 9 years ago - 8 comments
Labels: enhancement, question, visualization

#13 - plotKernel normalization

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: question, visualization

#12 - sanity-check plotKernel normalizations

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: bug, visualization

#11 - quantify cell's direction selectivity by summing spatial weights

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: enhancement, visualization

#10 - plot spike count correlations vs. RF similarity

Issue - State: closed - Opened by mobeets over 9 years ago - 3 comments
Labels: enhancement, visualization

#9 - plot PSTH split by stimulus direction

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: question, visualization

#8 - calculate CP for cell

Issue - State: closed - Opened by mobeets over 9 years ago - 6 comments
Labels: enhancement, question

#7 - tag interesting cells/good fits

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: fits

#6 - label cell type on sepVsScore plot

Issue - State: closed - Opened by mobeets over 9 years ago
Labels: enhancement, visualization

#5 - remove early easy trials on each day

Issue - State: closed - Opened by mobeets over 9 years ago - 3 comments
Labels: data

#4 - correlation of fits across folds

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: fits

#3 - tag cells with bimodal selectivity

Issue - State: closed - Opened by mobeets over 9 years ago - 1 comment
Labels: wontfix, fits

#2 - plot corrcoef (monkey-cell) vs. choice selectivity

Issue - State: closed - Opened by mobeets over 9 years ago - 2 comments
Labels: visualization

#1 - identical cells: 20140307-4 and 20140307-8

Issue - State: open - Opened by mobeets over 9 years ago
Labels: bug, data

GitHub / mobeets/gabormotionpulses issues and pull requests