Ecosyste.ms: Issues

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GitHub / mne-tools/mne-bids issues and pull requests

#1163 - MRG: Fix BIDSPath.basename for cases where only an extension was provided

Pull Request - State: closed - Opened by hoechenberger over 1 year ago - 2 comments

#1162 - Automatically assigning metadata

Issue - State: open - Opened by alexrockhill over 1 year ago - 15 comments
Labels: enhancement

#1161 - test minimal vs full mne-bids install

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 3 comments

#1160 - Fix BTi handling in mne-bids

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 3 comments

#1158 - only copy BTI headshape file if present

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 2 comments

#1157 - update env for gh-pages branch; BINDER

Pull Request - State: closed - Opened by sappelhoff over 1 year ago

#1156 - REL: v0.13

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 2 comments

#1155 - Problems with conversion of BTI datasets

Issue - State: closed - Opened by nugenta over 1 year ago - 4 comments
Labels: bug

#1154 - misc maint prior to release

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 1 comment

#1153 - MNE-BIDS 0.13 release

Issue - State: closed - Opened by sappelhoff over 1 year ago - 4 comments

#1152 - Export to EEGLAB format?

Issue - State: closed - Opened by laemtl over 1 year ago - 8 comments
Labels: enhancement

#1151 - EEGLab bug writing HDF5 persisting in MNE-BIDS

Issue - State: closed - Opened by christinerogers over 1 year ago - 3 comments
Labels: bug

#1150 - require testing data for test

Pull Request - State: closed - Opened by sappelhoff over 1 year ago

#1149 - Add ability to delete files from a BIDS dataset

Pull Request - State: closed - Opened by PierreGtch over 1 year ago - 10 comments

#1148 - filter h5py triggered numpy deprecation warning

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 1 comment

#1147 - [MRG] fix(write.py): throw warning instead of error on conflicting bids versions

Pull Request - State: closed - Opened by fordmcdonald over 1 year ago - 5 comments

#1146 - Fix name and add affiliation and orcid

Pull Request - State: closed - Opened by richardkoehler over 1 year ago - 1 comment

#1145 - Motion-BIDS

Issue - State: open - Opened by JuliusWelzel over 1 year ago - 19 comments
Labels: enhancement, MNE-Python

#1144 - MAINT: Use Black for formatting

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 11 comments

#1143 - Use Black for formatting

Issue - State: closed - Opened by sappelhoff over 1 year ago - 1 comment
Labels: maint

#1142 - fix version dropdown + misc maintenance

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 1 comment

#1141 - write_raw_bids() cannot handle MaxFiltered data

Issue - State: closed - Opened by hoechenberger over 1 year ago - 1 comment
Labels: bug

#1139 - MRG: Don't create directories when accessing BIDSPath.fpath

Pull Request - State: closed - Opened by hoechenberger over 1 year ago - 2 comments

#1138 - docs: dropdown menu on main no longer working

Issue - State: closed - Opened by sappelhoff over 1 year ago - 1 comment

#1137 - MRG: Add sessions as official suffix

Pull Request - State: closed - Opened by JonathanVHoecke over 1 year ago - 17 comments

#1135 - add new intersphinx

Pull Request - State: closed - Opened by sappelhoff over 1 year ago - 2 comments

#1134 - doc build fails: "tut-ieeg-localize" moved

Issue - State: closed - Opened by sappelhoff over 1 year ago - 2 comments
Labels: bug

#1132 - MRG: Write events.json with "sample", "value", and "trial_type" entries

Pull Request - State: closed - Opened by hoechenberger almost 2 years ago - 1 comment

#1131 - Problem loading mne-bids when MNE 1.0.0 and above is installed

Issue - State: closed - Opened by nw-duncan almost 2 years ago - 3 comments

#1130 - BIDS `sample` and `value` columns will be considered "arbitrary" columns soon

Issue - State: closed - Opened by sappelhoff almost 2 years ago - 1 comment

#1129 - WIP : add support for EMG data

Pull Request - State: open - Opened by agramfort almost 2 years ago - 9 comments

#1128 - MAINT: Work around MNE change

Pull Request - State: closed - Opened by larsoner almost 2 years ago - 4 comments

#1127 - restrict `find_matching_paths` to only look outside of `derivatives/`

Issue - State: closed - Opened by kaare-mikkelsen almost 2 years ago - 7 comments
Labels: Nice First Contribution Opportunity

#1126 - [MRG] Fix copyfile_eeglab type conflicts

Pull Request - State: closed - Opened by laemtl almost 2 years ago - 8 comments

#1125 - [MRG] FIX: Convert `line_freq` and `overwrite` to proper types in CLI

Pull Request - State: closed - Opened by sappelhoff almost 2 years ago - 3 comments

#1124 - command raw_to_bids takes overwrite and line_freq as text and fails for brainvision format

Issue - State: closed - Opened by achilleasNP almost 2 years ago - 1 comment
Labels: bug

#1123 - mne_bids.path.BIDSPath.fpath ignores value of 'check'

Issue - State: closed - Opened by kaare-mikkelsen almost 2 years ago - 4 comments
Labels: won't fix

#1122 - write_raw_bids does not produce a valid SET file

Issue - State: closed - Opened by laemtl almost 2 years ago - 20 comments
Labels: bug

#1121 - MAINT: Use git

Pull Request - State: closed - Opened by larsoner almost 2 years ago - 2 comments

#1120 - mne_bids.copyfiles.copyfile_eeglab assumes setname (from EEG struct) is equal to filename.

Issue - State: closed - Opened by kaare-mikkelsen almost 2 years ago - 13 comments
Labels: question

#1119 - update for new version of google analytics

Pull Request - State: closed - Opened by agramfort almost 2 years ago - 2 comments

#1118 - CI: `inspect_annotations` tests failing due to Matplotlib deprecation

Issue - State: closed - Opened by sappelhoff almost 2 years ago - 2 comments

#1117 - Sample NIRS data not read, problem with channel naming

Issue - State: open - Opened by loew about 2 years ago - 27 comments
Labels: bug

#1116 - circlci security breach

Issue - State: closed - Opened by sappelhoff about 2 years ago - 9 comments
Labels: maint

#1115 - pin sphinx < 6.0

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 2 comments

#1114 - Install MNE-Python stable from PyPI instead of GitHub

Pull Request - State: closed - Opened by hoechenberger about 2 years ago - 3 comments

#1113 - MRG: Fix amending a dataset when new columns are being added to participants.tsv

Pull Request - State: closed - Opened by hoechenberger about 2 years ago - 3 comments

#1112 - rel: v0.12

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 1 comment

#1111 - [MRG] fix links, remove ubuntu 20.04 from CI

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 2 comments

#1110 - Add support for writing neuromag122 data to BIDS

Pull Request - State: closed - Opened by agramfort about 2 years ago - 5 comments

#1108 - MAINT: Update CIs and bump minimum to 3.8

Pull Request - State: closed - Opened by larsoner about 2 years ago - 6 comments

#1107 - weird CI failure in schedules run: scipy build broken, "setuptools" missing

Issue - State: closed - Opened by sappelhoff about 2 years ago - 1 comment

#1106 - Fix CI via catching a warning

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 3 comments

#1105 - Cut 0.12 release

Issue - State: closed - Opened by hoechenberger about 2 years ago - 4 comments

#1103 - [ENH] Add function to enable smart path search #1098

Pull Request - State: closed - Opened by moritz-gerster about 2 years ago - 16 comments

#1102 - MRG: Fix writing preloaded data of a non-BIDS format with automated format conversion

Pull Request - State: closed - Opened by hoechenberger about 2 years ago - 6 comments

#1101 - ENH: fix manufacturer checking in _channels_tsv()

Issue - State: closed - Opened by dengemann about 2 years ago - 6 comments
Labels: bug

#1100 - MNE-Python channel unit warnings should be suppressed

Issue - State: closed - Opened by jo780-full about 2 years ago - 13 comments
Labels: bug

#1099 - ENH: Auto warning stacklevel

Pull Request - State: closed - Opened by larsoner about 2 years ago - 5 comments

#1098 - Extend method BIDSPath().match() to enable smart path search

Issue - State: closed - Opened by moritz-gerster about 2 years ago - 10 comments
Labels: enhancement

#1097 - ENH: Better error message on fpath

Pull Request - State: closed - Opened by larsoner about 2 years ago - 1 comment

#1096 - Metadata issues in ds004107

Issue - State: closed - Opened by ftadel about 2 years ago - 10 comments
Labels: dataset-problem

#1095 - more specific import to maybe avoid issue

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 1 comment

#1094 - doc build fails because of mne (main)

Issue - State: closed - Opened by sappelhoff about 2 years ago - 1 comment

#1093 - BUG: Fix API for candidates

Pull Request - State: closed - Opened by larsoner about 2 years ago - 4 comments

#1092 - fix: nirs convert only auto accepted

Pull Request - State: closed - Opened by sappelhoff about 2 years ago - 2 comments

#1091 - DOC: Fix doc build

Pull Request - State: closed - Opened by larsoner about 2 years ago - 2 comments

#1090 - CI: Problem with `gen_cli.py`

Issue - State: closed - Opened by sappelhoff over 2 years ago - 3 comments

#1089 - REL: v0.11.1

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 2 comments

#1088 - [ENH] growing a BIDS dataset by adding pariticpants?

Issue - State: closed - Opened by dengemann over 2 years ago - 7 comments

#1087 - ENH: Make suggestion

Pull Request - State: closed - Opened by larsoner over 2 years ago - 2 comments

#1085 - BUG: Bug with reading events for empty room

Issue - State: closed - Opened by larsoner over 2 years ago - 4 comments
Labels: dataset-problem

#1084 - We're not writing all annotations if events are passed to write_raw_bids() as well

Issue - State: closed - Opened by hoechenberger over 2 years ago - 10 comments
Labels: bug

#1083 - ENH: Allow returning candidate BIDSPaths

Pull Request - State: closed - Opened by larsoner over 2 years ago - 8 comments

#1082 - Mismatch of coord systems between electrodes and channels/events

Issue - State: open - Opened by laemtl over 2 years ago - 5 comments

#1081 - ENH: Improve error message

Pull Request - State: closed - Opened by larsoner over 2 years ago - 2 comments

#1080 - ENH: Better error message

Pull Request - State: closed - Opened by larsoner over 2 years ago - 3 comments

#1079 - avoid creating many Annotations objects in for loop

Pull Request - State: closed - Opened by agramfort over 2 years ago - 3 comments

#1078 - Start developing 0.12

Pull Request - State: closed - Opened by sappelhoff over 2 years ago

#1077 - REL: v0.11

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 2 comments
Labels: hacktoberfest-accepted

#1076 - MAINT: Tolerate new MNE behavior

Pull Request - State: closed - Opened by larsoner over 2 years ago - 8 comments

#1074 - MAINT: New release?

Issue - State: closed - Opened by larsoner over 2 years ago - 7 comments

#1073 - MAINT: Ensure we dont download without permission

Pull Request - State: closed - Opened by larsoner over 2 years ago - 7 comments
Labels: tests

#1072 - [MRG]: Add support for reading curry EEG files

Pull Request - State: closed - Opened by dengemann over 2 years ago - 19 comments

#1071 - fix CI after upstream changes

Pull Request - State: closed - Opened by sappelhoff over 2 years ago - 2 comments

#1070 - Add support for Curry .cdt input files

Issue - State: closed - Opened by dengemann over 2 years ago - 12 comments
Labels: enhancement

#1069 - Fix Inspector tests for Matplotlib 3.6 compatibility

Pull Request - State: closed - Opened by hoechenberger over 2 years ago - 6 comments

#1068 - `key_press_event` is deprecated, needs to be replaced in our code

Issue - State: closed - Opened by sappelhoff over 2 years ago - 3 comments
Labels: code-health

#1067 - Fix chpi write

Pull Request - State: closed - Opened by eort over 2 years ago - 22 comments
Labels: enhancement

#1066 - [MRG] Suggest alternatives when value not found in list

Pull Request - State: closed - Opened by larsoner over 2 years ago - 11 comments

#1065 - BUG: Handling subjects that don't start with sub- ?

Issue - State: closed - Opened by larsoner over 2 years ago - 8 comments

#1064 - [BUG] unintuitive behavior with split files

Issue - State: open - Opened by eort over 2 years ago - 6 comments
Labels: bug

#1063 - MRG: Remove special-casing for NIRS bids-validator

Pull Request - State: closed - Opened by hoechenberger over 2 years ago - 2 comments
Labels: bids-validator, tests

#1062 - Fix BIDSPath.basename for cases where only an extension was provided

Pull Request - State: closed - Opened by hoechenberger over 2 years ago - 1 comment