mlmed/torchxrayvision issues and pull requests

#158 - Was xrv.baseline_models.chestx_det.PSPNet() trained on https://huggingface.co/datasets/BrachioLab/chestx ?

Issue - State: open - Opened by PabloMessina about 2 months ago - 3 comments

#157 - does this support custom dataset?

Issue - State: open - Opened by hnyll 3 months ago - 2 comments

#156 - Problem with model classification of Mimic CXR

Issue - State: open - Opened by danielemolino 3 months ago - 3 comments

#155 - TODO: Add ChestXRayAnatomySegmentation Model

Issue - State: open - Opened by ieee8023 4 months ago
Labels: enhancement

#154 - Patch for case issue

Pull Request - State: closed - Opened by ieee8023 5 months ago

#153 - BBox Pulmonary Fibrosis missing for VinBig Data set

Issue - State: closed - Opened by ajb8866 5 months ago - 4 comments

#152 - Everything classified wrongly (seems like there is some system error I do)

Issue - State: open - Opened by croraf 5 months ago - 4 comments

#151 - what is ops_thresh and how do you arrive at the hard coded value for each model?

Issue - State: open - Opened by fanhui3 6 months ago - 1 comment

#150 - WIP Add medical mae

Pull Request - State: open - Opened by ieee8023 7 months ago

#147 - pep8 cleanup and fix tests

Pull Request - State: closed - Opened by ieee8023 10 months ago

#146 - How to solve AttributeError: partially initialized module 'torchxrayvision' has no attribute 'datasets' (most likely due to a circular import)

Issue - State: closed - Opened by tsongsun 11 months ago - 4 comments

#145 - Fix chexpert path error

Pull Request - State: closed - Opened by ieee8023 12 months ago

#144 - Benchmarks for MIMIC-CXR dataset

Issue - State: closed - Opened by santosh9sanjeev about 1 year ago - 10 comments

#143 - Add View classifier

Pull Request - State: closed - Opened by ieee8023 about 1 year ago

#142 - The use of ResNetAE

Issue - State: closed - Opened by Eldo-rado about 1 year ago - 1 comment

#141 - Some questions about the 18 class

Issue - State: closed - Opened by Liqq1 about 1 year ago - 1 comment

#140 - dataset_utils module not available to be imported from torchxrayvision

Issue - State: closed - Opened by zahuang923 about 1 year ago

#139 - Question about "all" model and results

Issue - State: closed - Opened by MohammedSB about 1 year ago - 3 comments

#138 - how to analys the results, whatever values are coming in the end in the dictonary, how to evaluate them , what are they : are they probability value, are they kaapa score

Issue - State: open - Opened by Shrishti120 about 1 year ago - 4 comments

#137 - Update list of files with errors in the PadChest dataset

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#136 - make targets more clear in docs

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#135 - Improve docs

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#134 - Add Riken age prediction model

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#133 - Update requirements to fix tests.

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#132 - Add errors when setting fields on subset and merge datasets

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#131 - Add sphinx documentation

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#130 - Merge and Align dataset labels

Issue - State: closed - Opened by zainsarwar865 over 1 year ago - 13 comments

#129 - feat(dcmReader): added a generic dicom reader

Pull Request - State: closed - Opened by a-parida12 over 1 year ago

#128 - Why I'm getting different results for the same image?

Issue - State: closed - Opened by Moheeb77 over 1 year ago - 7 comments

#127 - Add windows tests

Pull Request - State: closed - Opened by ieee8023 over 1 year ago

#126 - Error loading PadChest dataset

Issue - State: closed - Opened by dgmato over 1 year ago - 4 comments

#125 - DICOM to X-Ray PNG

Issue - State: closed - Opened by a-parida12 over 1 year ago - 13 comments

#124 - Error when loading NIH data set

Issue - State: closed - Opened by pat-rig over 1 year ago - 2 comments

#123 - CXR image quality assessment dataset

Issue - State: open - Opened by houjunlin over 1 year ago - 3 comments

#122 - Add mi2rl CheSS model

Pull Request - State: open - Opened by ieee8023 over 1 year ago

#121 - Upload weights to TorchXrayVision github

Issue - State: open - Opened by kyungjincho over 1 year ago - 16 comments

#120 - Do you have models trained and/or evaluated on Chest ImaGenome?

Issue - State: open - Opened by PabloMessina over 1 year ago - 6 comments

#119 - Clarification regarding NaN labels and model output dimensions

Issue - State: closed - Opened by b-turan over 1 year ago - 4 comments

#118 - Add pspnet segmentation pre-trained model

Pull Request - State: closed - Opened by ieee8023 over 1 year ago - 5 comments

#117 - add heatmap notebook and example image

Pull Request - State: closed - Opened by ieee8023 almost 2 years ago

#116 - Process_image return data?

Issue - State: closed - Opened by darksky007 almost 2 years ago - 10 comments

#115 - Only print dataset totals when in a notebook

Pull Request - State: closed - Opened by ieee8023 almost 2 years ago

#113 - Console always prints dataset statistics

Issue - State: closed - Opened by pat-rig almost 2 years ago - 5 comments

#112 - Example Results with Pretrained Autoencoder

Issue - State: closed - Opened by Htermotto almost 2 years ago - 4 comments

#111 - add resolution check for ae

Pull Request - State: closed - Opened by ieee8023 almost 2 years ago

#110 - Any dataset tool to transform original big .jpg into small one

Issue - State: open - Opened by catfish132 almost 2 years ago - 2 comments

#109 - Example notebook doesn't work and has poor results when fixed

Issue - State: closed - Opened by Htermotto almost 2 years ago - 5 comments

#108 - Updated xray_models example notebook

Pull Request - State: open - Opened by Htermotto almost 2 years ago

#107 - not match between CheX_Dataset and model with weights="densenet121-res224-chex"

Issue - State: closed - Opened by catfish132 almost 2 years ago - 9 comments

#106 - what is difference between weights="densenet121-res224-mimic_ch" and weights="densenet121-res224-mimic_nb"

Issue - State: closed - Opened by catfish132 almost 2 years ago - 3 comments

#105 - extract 14class for mimic-crx

Issue - State: closed - Opened by catfish132 about 2 years ago - 3 comments

#104 - Cleanup using autopep8

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#103 - Add age and sex in datasets

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#102 - Initial draft of the Emory HITI race prediction model

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#101 - Update citation

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#100 - Improve docs

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#99 - Improve docs

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#98 - maintain the csv in the covariate dataset

Pull Request - State: closed - Opened by ieee8023 about 2 years ago - 2 comments

#97 - Refactor for data aug seed issue and update demo notebook

Pull Request - State: closed - Opened by ieee8023 about 2 years ago

#96 - How to get binary scores?

Issue - State: closed - Opened by swamiviv about 2 years ago - 2 comments

#95 - streamlit app version of process_image.py script

Pull Request - State: closed - Opened by animesh about 2 years ago - 1 comment

#94 - autoencoder input size

Issue - State: closed - Opened by chiragnagpal over 2 years ago - 4 comments
Labels: enhancement

#93 - Confusion about input image format

Issue - State: closed - Opened by antonie-z over 2 years ago - 3 comments

#92 - transfer learning for resnet50-res512-all

Issue - State: open - Opened by dev-yue over 2 years ago - 3 comments

#91 - Sharing models through Hugging Face Hub

Issue - State: open - Opened by omarespejel over 2 years ago

#90 - Warn when possibly using the wrong normalization

Pull Request - State: closed - Opened by ieee8023 over 2 years ago - 2 comments

#89 - Same Output for each image

Issue - State: closed - Opened by mohkoh19 over 2 years ago - 6 comments

#88 - How to use op_thresh during model testing

Issue - State: closed - Opened by adwaykanhere over 2 years ago - 4 comments

#87 - Remove pydicom from requirements

Pull Request - State: closed - Opened by ieee8023 over 2 years ago - 2 comments

#86 - remove pure_labels option

Pull Request - State: closed - Opened by ieee8023 over 2 years ago

#85 - add error message for missing metadata.csv file

Pull Request - State: closed - Opened by ieee8023 over 2 years ago

#84 - raise errors on incorrect usage

Pull Request - State: closed - Opened by ieee8023 over 2 years ago - 2 comments

#83 - Fix autoencoder variable assignment to address gradient error

Pull Request - State: closed - Opened by ieee8023 over 2 years ago

#82 - enable script to load resnet models

Pull Request - State: closed - Opened by ieee8023 over 2 years ago

#81 - Model not classifying obvious pneumothorax

Issue - State: open - Opened by AceMcAwesome77 over 2 years ago - 4 comments

#80 - Bump version and add json file to dist package

Pull Request - State: closed - Opened by ieee8023 almost 3 years ago

#79 - missing self. in weights_filename_local

Pull Request - State: closed - Opened by KiLJ4EdeN almost 3 years ago - 1 comment

#78 - Clean up code style

Pull Request - State: closed - Opened by ieee8023 almost 3 years ago

#77 - Raise error if both num_classes and weights are specified

Pull Request - State: closed - Opened by ieee8023 almost 3 years ago - 1 comment

#76 - num_classes no longer changing the classifier

Issue - State: closed - Opened by ihamdi almost 3 years ago - 5 comments

#75 - transforms and augmentation getters and setters

Pull Request - State: closed - Opened by etetteh almost 3 years ago - 5 comments

#74 - Disabling dataset summary statistics

Issue - State: closed - Opened by santoshg117 almost 3 years ago - 2 comments

#73 - test

Pull Request - State: closed - Opened by ieee8023 almost 3 years ago

#72 - WIP: General views

Pull Request - State: closed - Opened by RupertBrooks almost 3 years ago

#71 - NLMTB - some clarifications

Pull Request - State: closed - Opened by RupertBrooks almost 3 years ago - 1 comment

#70 - Representation learning example notebook and some fixes

Pull Request - State: closed - Opened by ieee8023 almost 3 years ago

#69 - Output labels "Lesion" and "Lung Lesion" exist in different datasets. They should be unified.

Issue - State: open - Opened by josephdviviano about 3 years ago

#68 - NLMTB_Dataset cannot be run without images

Issue - State: open - Opened by josephdviviano about 3 years ago

#67 - COVID19_dataset is missing the default metadata file

Issue - State: closed - Opened by josephdviviano about 3 years ago - 2 comments

#66 - datasets.py SyntaxError: Non-ASCII character '\xe2' in file

Issue - State: open - Opened by josephdviviano about 3 years ago - 1 comment

#65 - Small fixes

Pull Request - State: closed - Opened by ieee8023 about 3 years ago

#64 - Recursive merge bug

Pull Request - State: closed - Opened by ieee8023 about 3 years ago

#63 - Finetune pretrained models on different dataset

Issue - State: closed - Opened by matteopilotto about 3 years ago - 5 comments

#62 - code from paper

Pull Request - State: closed - Opened by josephdviviano about 3 years ago

#61 - Discussion: throwing an error if the image is not the right size

Issue - State: closed - Opened by ieee8023 about 3 years ago
Labels: enhancement

#59 - cannot modify number of classes

Issue - State: closed - Opened by ASKanse about 3 years ago - 1 comment

#58 - More in depth documentation

Issue - State: closed - Opened by SystematicError about 3 years ago - 3 comments
Labels: documentation

#57 - Better tests fixing small bugs

Pull Request - State: closed - Opened by ieee8023 about 3 years ago

#56 - refactor: clean up normalize and convert all getitems to consistent style

Pull Request - State: closed - Opened by ieee8023 about 3 years ago

#55 - handle batches for chexpert model

Pull Request - State: closed - Opened by ieee8023 over 3 years ago

GitHub / mlmed/torchxrayvision issues and pull requests