Ecosyste.ms: Issues

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GitHub / mlbendall/telescope issues and pull requests

#59 - fix issue #15 'int' object is not iterable

Pull Request - State: open - Opened by fizwit 12 months ago - 2 comments

#58 - create new release

Issue - State: open - Opened by fizwit 12 months ago

#57 - Issue installing newest version (cython problem?)

Issue - State: open - Opened by murphytho 12 months ago - 3 comments

#56 - ValueError: fetch called on bamfile without index

Issue - State: open - Opened by SabinaMT 12 months ago - 1 comment

#54 - --stranded_mode RF

Issue - State: open - Opened by sanhe374 about 1 year ago - 3 comments

#51 - telescope installation

Issue - State: open - Opened by fatemehkordevani about 1 year ago - 1 comment

#50 - error message

Issue - State: open - Opened by hkoo87 about 1 year ago - 2 comments

#49 - make telescope faster

Issue - State: open - Opened by AlisaGU over 1 year ago - 2 comments

#47 - extension of issue https://github.com/mlbendall/telescope/issues/44

Issue - State: open - Opened by pdeepak87 over 1 year ago - 5 comments

#46 - Installation to high performance computing cluster failing

Issue - State: open - Opened by guypwhunt over 1 year ago - 5 comments

#45 - Empty output caused by no reported overlap in annotation

Issue - State: closed - Opened by M-K1 over 1 year ago - 4 comments

#44 - Deprecated numpy alias causing AttributeError

Issue - State: closed - Opened by walidabualafia over 1 year ago - 3 comments

#43 - downstream

Issue - State: open - Opened by saramoein372 over 1 year ago

#42 - Status of stellarscope

Issue - State: open - Opened by skchronicles over 1 year ago

#41 - scRNA data from poly A priming sequencing

Issue - State: closed - Opened by HJ234 about 2 years ago - 1 comment

#40 - error: invalid choice: 'bulk'

Issue - State: closed - Opened by DanielaMombach over 2 years ago - 4 comments

#39 - Differential analysis

Issue - State: open - Opened by ZunpengLiu over 2 years ago

#38 - Telescope for Single cell data

Issue - State: open - Opened by tawfikd over 2 years ago

#37 - Error with multiprocessing and `--updated_sam`

Issue - State: open - Opened by bernt-matthias over 2 years ago

#36 - index.gtf file issue (loci column and file format)

Issue - State: open - Opened by jamesc99 over 2 years ago - 2 comments

#35 - telescope: error: unrecognized arguments: --stranded_mode

Issue - State: closed - Opened by jviot over 2 years ago - 2 comments

#34 - New umi tracking

Pull Request - State: closed - Opened by mlbendall over 2 years ago

#33 - Stellarscope report features are incorrect

Issue - State: open - Opened by mlbendall over 2 years ago

#32 - How to run telescope on single cell dataset

Issue - State: closed - Opened by zijzhang over 2 years ago - 1 comment

#31 - KeyError

Issue - State: open - Opened by biostars-nyc almost 3 years ago

#30 - new release?

Issue - State: closed - Opened by GodloveD about 3 years ago - 1 comment

#29 - New umi tracking

Pull Request - State: closed - Opened by mgreenig about 3 years ago

#28 - AssertionError: Error

Issue - State: open - Opened by AssumeAssume about 3 years ago

#27 - Install Telescope with Miniconda3

Issue - State: closed - Opened by YangpingLi over 3 years ago - 1 comment

#26 - Cellsplit

Pull Request - State: closed - Opened by mgreenig over 3 years ago

#25 - Single cell

Pull Request - State: closed - Opened by mgreenig over 3 years ago

#24 - Stranded mode

Pull Request - State: closed - Opened by mgreenig over 3 years ago

#23 - .

Issue - State: closed - Opened by wangliying235 over 3 years ago

#22 - Clarification of required BAM sorting method

Issue - State: closed - Opened by rhughwhite over 3 years ago - 2 comments

#21 - Dev

Pull Request - State: closed - Opened by mlbendall over 3 years ago

#20 - Only use "exon" feature types

Issue - State: closed - Opened by mlbendall over 3 years ago

#19 - TypeError: '<=' not supported between instances of 'int' and 'Interval'

Issue - State: open - Opened by zya226 almost 4 years ago - 1 comment

#18 - Annotation for mouse (mm10)?

Issue - State: open - Opened by YiweiNiu almost 4 years ago - 3 comments

#17 - Counting by repName

Issue - State: closed - Opened by rn383 about 4 years ago - 3 comments

#16 - Installing telescope without conda

Issue - State: closed - Opened by xunchen85 over 4 years ago

#15 - Error when running telescope assign

Issue - State: open - Opened by jalalsiddiqui over 4 years ago - 11 comments

#14 - Consideration of ERV splicing events.

Issue - State: open - Opened by yyoshiaki over 4 years ago - 2 comments

#13 - KeyError: 'locus'

Issue - State: closed - Opened by somethingp almost 5 years ago - 4 comments

#12 - Telescope 'MemoryError'

Issue - State: closed - Opened by hchintalapudi almost 5 years ago

#11 - TypeError: 'int' object is not iterable

Issue - State: open - Opened by froy0212 almost 5 years ago - 2 comments

#10 - Number of transcripts in report

Issue - State: open - Opened by karini925 almost 5 years ago - 2 comments

#9 - ValueError: invalid literal for int() with base 10: 'cached'

Issue - State: open - Opened by nongbaoting about 5 years ago - 5 comments

#8 - Output counts for all transcripts

Issue - State: open - Opened by mlbendall over 5 years ago - 1 comment

#7 - Create report file even if no aligned reads

Issue - State: open - Opened by mlbendall over 5 years ago

#6 - Telescope Bioconda Package

Issue - State: closed - Opened by davebx over 5 years ago - 3 comments

#5 - KeyError: 'nunmap_idx'

Issue - State: closed - Opened by thejustpark over 5 years ago - 1 comment

#4 - Temporary BAM files output are very large

Issue - State: closed - Opened by mlbendall about 6 years ago

#3 - Telescope - TypeError: 'int' object is not iterable

Issue - State: closed - Opened by GislaineCurty about 6 years ago - 2 comments

#2 - Change default for `theta_prior`

Issue - State: closed - Opened by mlbendall about 6 years ago

#1 - Telescope installation

Issue - State: closed - Opened by GislaineCurty about 6 years ago - 3 comments