Ecosyste.ms: Issues

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GitHub / miykael/atlasreader issues and pull requests

#148 - [BOT] update pre-commit hooks

Pull Request - State: open - Opened by github-actions[bot] 7 months ago

#147 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#146 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#145 - Less clusters in csv file than output figures

Issue - State: closed - Opened by vigwma 11 months ago - 7 comments

#144 - Bump pre-commit/action from 3.0.0 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#143 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago

#142 - Bump peter-evans/create-pull-request from 5 to 6

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#141 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#140 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago

#139 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago

#138 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago

#137 - [BOT] update pre-commit hooks

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago

#136 - [MAINT] switch to pyproject.toml and hatchling

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#135 - [STY] update styling via precommit

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#134 - [MAINT] replace zenodo.json with citation.cff

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#133 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#132 - [MAINT] add github action workflow for flake8

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#131 - [MAINT] run test and flake8 github actions

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 5 comments

#130 - add more "formatting" ?

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#129 - fix broken badge in readme

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#128 - update packaging

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 10 comments

#127 - replace zenodo.json by citation.cff

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#126 - run flake8 via github action instead of travis

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 2 comments

#125 - run tests on github action instead of travis

Issue - State: closed - Opened by Remi-Gau over 1 year ago - 1 comment

#124 - [MAINT] add tests via github CI

Pull Request - State: closed - Opened by Remi-Gau over 1 year ago - 4 comments

#123 - UserWarning: empty mask

Issue - State: open - Opened by AtomicNess123 almost 2 years ago

#120 - Question: does AtlasReader reslice statistical maps?

Issue - State: open - Opened by HuygelierH almost 2 years ago

#119 - A way to name cluster plots based on atlas label?

Issue - State: open - Opened by andreifoldes over 2 years ago

#118 - Desikan Killiany Atlas

Issue - State: closed - Opened by nm9404 almost 4 years ago - 2 comments

#117 - python dependency ?

Issue - State: closed - Opened by wlyzgw about 4 years ago - 2 comments

#116 - White matter atlases

Issue - State: open - Opened by ElijahMak about 4 years ago - 1 comment

#115 - Updates to newest nibabel and pandas versions

Pull Request - State: closed - Opened by miykael over 4 years ago

#114 - read_atlas_peak with "pip install"

Issue - State: closed - Opened by mriedel56 over 4 years ago - 1 comment

#113 - Using mask as input image?

Issue - State: closed - Opened by landge almost 5 years ago - 6 comments

#112 - [FIX] rounding issue

Pull Request - State: closed - Opened by AnnaD15 almost 5 years ago - 3 comments

#110 - Corrects the read_atlas bug mentioned in #109

Pull Request - State: closed - Opened by miykael almost 6 years ago - 1 comment

#109 - ar.read_atlas_peak(atlastype) not working if atlastype is 'desikan_killiany' str

Issue - State: closed - Opened by pfdamasceno almost 6 years ago - 2 comments

#108 - Updating reference after JOSS publication

Pull Request - State: closed - Opened by miykael almost 6 years ago

#107 - Second round of updates in reaction to JOSS review

Pull Request - State: closed - Opened by miykael almost 6 years ago - 2 comments

#106 - JOSS REVIEW: checksum unit test failing

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 5 comments

#105 - JOSS REVIEW: scipy and sklearn missing DOIs

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#104 - JOSS REVIEW: paper wording suggestion

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#103 - JOSS REVIEW: clarify additional params

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#102 - JOSS REVIEW: add default value for glass_plot_kws and stat_plot_kws

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#101 - Debugs code and improves documentation of voxel_thresh parameter

Pull Request - State: closed - Opened by miykael almost 6 years ago - 2 comments

#100 - JOSS REVIEW: voxel_thresh parameter

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 6 comments

#99 - Implements reviewer requested changes

Pull Request - State: closed - Opened by miykael almost 6 years ago - 2 comments

#98 - JOSS REVIEW: target audience

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#97 - JOSS REVIEW: repo is large

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 3 comments

#96 - JOSS REVIEW: typo in example notebook

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#95 - JOSS REVIEW: redundant install requires?

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#94 - JOSS REVIEW: Update links in CONTRIBUTING.md

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 2 comments

#93 - JOSS REVIEW: Not able to retrieve statmap from neurovault

Issue - State: closed - Opened by andrewheusser almost 6 years ago - 5 comments

#92 - Adds zenodo DOI for beta release v0.0.2

Pull Request - State: closed - Opened by miykael about 6 years ago - 2 comments

#91 - Write sentences in markdown on individual lines

Issue - State: closed - Opened by KirstieJane about 6 years ago - 1 comment

#90 - provided some typo fixes and suggested edits

Pull Request - State: closed - Opened by danjgale about 6 years ago - 2 comments

#89 - Update README and notebook

Pull Request - State: closed - Opened by miykael about 6 years ago - 2 comments

#88 - Add license text from PR #71 to __init__

Pull Request - State: closed - Opened by miykael about 6 years ago - 3 comments

#87 - License message is not resolved yet

Issue - State: closed - Opened by miykael about 6 years ago - 2 comments

#86 - Revert "ENH: Adds license message on first import"

Pull Request - State: closed - Opened by miykael about 6 years ago - 1 comment

#85 - Correct code coverage

Pull Request - State: closed - Opened by miykael about 6 years ago - 2 comments

#84 - FIX: file extension bug

Pull Request - State: closed - Opened by miykael about 6 years ago - 2 comments

#83 - can not install through pip

Issue - State: closed - Opened by EhsanTadayon about 6 years ago - 6 comments

#82 - ENH: removes some more numpy warnings

Pull Request - State: closed - Opened by miykael over 6 years ago - 4 comments

#81 - ENH: make cluster extent inclusive

Pull Request - State: closed - Opened by miykael over 6 years ago - 1 comment

#80 - ENH: adds test to check table output

Pull Request - State: closed - Opened by miykael over 6 years ago - 3 comments

#79 - ENH: Adds notebook tests on travis

Pull Request - State: closed - Opened by miykael over 6 years ago - 2 comments

#78 - ENH: add atlas marsatlas_colin27

Pull Request - State: closed - Opened by miykael over 6 years ago - 2 comments

#77 - What about 4D images?

Issue - State: closed - Opened by miykael over 6 years ago - 3 comments
Labels: question

#76 - Rename 'volume' to 'volume_mm' to clarify unit

Pull Request - State: closed - Opened by miykael over 6 years ago - 2 comments

#75 - Better error handling for when stats image is empty after thresholding

Issue - State: closed - Opened by miykael over 6 years ago - 1 comment
Labels: bug, help wanted, question

#74 - Using this to label something other than a stat image

Issue - State: closed - Opened by saigerutherford over 6 years ago - 9 comments

#73 - ENH: Add default atlases

Pull Request - State: closed - Opened by miykael over 6 years ago - 3 comments

#72 - MNI152 overlay of atlases

Issue - State: closed - Opened by miykael over 6 years ago - 5 comments

#71 - ENH: Adds license message on first import

Pull Request - State: closed - Opened by rmarkello over 6 years ago - 5 comments

#70 - WIP, ENH: Adds `queryatlas` command for coordinates of interest

Pull Request - State: closed - Opened by rmarkello over 6 years ago - 6 comments

#69 - ENH: doc fixes and changed default files to have atlasreader as prefix

Pull Request - State: closed - Opened by danjgale over 6 years ago - 5 comments

#68 - ENH: Switch default filename to atlasreader and adjust relevant documentation

Issue - State: closed - Opened by danjgale over 6 years ago - 1 comment

#67 - Atlas and template revision

Pull Request - State: closed - Opened by miykael over 6 years ago - 10 comments

#66 - Initiates paper for Journal of Open Source Software (JOSS)

Pull Request - State: closed - Opened by miykael over 6 years ago - 9 comments

#65 - FIX: Fixes error when provided statmaps contains no clusters

Pull Request - State: closed - Opened by rmarkello over 6 years ago - 6 comments

#64 - ENH: Fixes float format in CSV output

Pull Request - State: closed - Opened by rmarkello over 6 years ago - 4 comments

#63 - REF: Cluster extent not optional

Pull Request - State: closed - Opened by rmarkello over 6 years ago - 2 comments

#62 - Do you know app.codacy.com?

Issue - State: closed - Opened by miykael over 6 years ago - 4 comments

#61 - Cluster extent parameter seems to be broken

Issue - State: closed - Opened by miykael over 6 years ago - 1 comment

#60 - Add talairach atlas

Pull Request - State: closed - Opened by miykael over 6 years ago - 14 comments

#59 - ENH: add default text to cli help text

Pull Request - State: closed - Opened by miykael over 6 years ago - 2 comments

#58 - Correct cluster reader

Pull Request - State: closed - Opened by miykael over 6 years ago - 3 comments

#57 - Ideas for other atlases?

Issue - State: open - Opened by miykael over 6 years ago - 8 comments

#56 - Test atlasreader with different voxel resolutions

Issue - State: closed - Opened by miykael over 6 years ago - 2 comments

#55 - ENH: orders clusters by cluster size

Pull Request - State: closed - Opened by miykael over 6 years ago - 4 comments

#54 - ENH: sets symmetric_cbar to false

Pull Request - State: closed - Opened by miykael over 6 years ago - 5 comments

#53 - Duplication of atlas names in cli help text

Issue - State: closed - Opened by miykael over 6 years ago - 1 comment
Labels: help wanted, good first issue

#52 - Should atlasreader CLI include defaults in the help message?

Issue - State: closed - Opened by miykael over 6 years ago
Labels: help wanted, good first issue

#51 - fix pandas df output

Pull Request - State: closed - Opened by PeerHerholz over 6 years ago - 1 comment

#50 - Additional plotting options added to create_ouput

Pull Request - State: closed - Opened by danjgale over 6 years ago - 6 comments

#49 - Fixed paths and bash calls in demo notebook

Pull Request - State: closed - Opened by danjgale over 6 years ago - 2 comments