mitoNGS/mtoolnote issues and pull requests

#40 - Bump wheel from 0.33.4 to 0.38.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#39 - Bump codecov from 2.0.15 to 2.0.16

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#38 - Bump pip from 19.2 to 21.1

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#37 - Bump pip from 19.1.1 to 19.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#36 - Bump aiohttp from 3.4.4 to 3.7.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#35 - csv --> HTML output

Issue - State: closed - Opened by domenico-simone about 4 years ago - 1 comment
Labels: enhancement

#34 - New fields for csv output

Issue - State: open - Opened by domenico-simone about 4 years ago
Labels: enhancement

#33 - One row per sample/allele in csv output

Issue - State: open - Opened by domenico-simone about 4 years ago
Labels: enhancement

#32 - Data license

Issue - State: open - Opened by lacek about 4 years ago

#31 - Executable available through pip installation

Issue - State: closed - Opened by domenico-simone over 4 years ago
Labels: enhancement

#30 - SQLite issue when running through snakemake

Issue - State: open - Opened by domenico-simone over 4 years ago
Labels: backlog

#29 - ENH: Add options to choose annotation subsets

Pull Request - State: closed - Opened by robertopreste over 4 years ago - 1 comment

#28 - Add flags for specific annotation subsets

Issue - State: closed - Opened by robertopreste over 4 years ago
Labels: enhancement

#27 - ENH: Add functional locus annotations

Pull Request - State: closed - Opened by robertopreste over 4 years ago - 1 comment

#26 - MAINT: Update basic structure

Pull Request - State: closed - Opened by robertopreste over 4 years ago - 1 comment

#25 - [temporary] Tests and functionality issues for non-human annotation

Issue - State: closed - Opened by robertopreste over 4 years ago - 1 comment
Labels: bug

#24 - Add functional loci basic information

Issue - State: closed - Opened by robertopreste over 4 years ago
Labels: enhancement

#23 - MAINT: Collect basic locus information using the Loci table

Pull Request - State: closed - Opened by robertopreste over 4 years ago - 1 comment

#22 - Use Loci table for basic locus info

Issue - State: closed - Opened by robertopreste over 4 years ago
Labels: maintenance

#21 - Update annotations

Issue - State: open - Opened by robertopreste over 4 years ago
Labels: maintenance

#20 - Update documentation

Issue - State: open - Opened by robertopreste over 4 years ago
Labels: documentation

#19 - Refactor code

Issue - State: open - Opened by robertopreste over 4 years ago
Labels: maintenance

#18 - Update SQLAlchemy

Pull Request - State: closed - Opened by robertopreste over 4 years ago - 1 comment

#17 - Update SQLAlchemy

Issue - State: closed - Opened by robertopreste over 4 years ago

#16 - TST: Create proper unittests and update testfiles

Pull Request - State: closed - Opened by robertopreste over 4 years ago - 1 comment

#15 - ENH: Add locus info to annotations

Pull Request - State: closed - Opened by robertopreste over 4 years ago

#14 - Add basic locus info for non-annotated variants

Issue - State: closed - Opened by robertopreste over 4 years ago
Labels: enhancement

#13 - CI: Include osx in Travis testing

Pull Request - State: closed - Opened by robertopreste almost 5 years ago

#12 - Include osx in Travis testing

Issue - State: closed - Opened by robertopreste almost 5 years ago

#11 - Add repr to existing classes

Pull Request - State: closed - Opened by robertopreste almost 5 years ago

#10 - Add repr to classes

Issue - State: closed - Opened by robertopreste almost 5 years ago

#9 - Move constants to the proper file and clean code

Pull Request - State: closed - Opened by robertopreste almost 5 years ago

#8 - Update constants file

Issue - State: closed - Opened by robertopreste almost 5 years ago

#7 - Create unittests

Issue - State: closed - Opened by robertopreste almost 5 years ago

#6 - Add haplogroup-specific allele frequencies and predictors to annotations

Pull Request - State: closed - Opened by robertopreste almost 5 years ago

#5 - MutPred score

Issue - State: closed - Opened by clody23 almost 5 years ago - 1 comment

#4 - Add haplogroup-specific allele frequencies

Issue - State: closed - Opened by robertopreste almost 5 years ago - 3 comments

#3 - v0.1.3

Pull Request - State: closed - Opened by robertopreste almost 5 years ago

#2 - Add option to create csv

Pull Request - State: closed - Opened by robertopreste about 5 years ago

#1 - Non-human annotations take too long

Issue - State: closed - Opened by robertopreste about 5 years ago
Labels: enhancement

GitHub / mitoNGS/mtoolnote issues and pull requests