Ecosyste.ms: Issues

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GitHub / mintproject/mic issues and pull requests

#354 - build(deps): bump pyjwt from 1.7.1 to 2.4.0 in /src/mic/tests/resources/188/mic/docker

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#353 - CWL that it creates doesn't have networking access

Issue - State: open - Opened by mosoriob over 2 years ago

#352 - fix: publishing - the model without versions

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#351 - publishing fails if the model doesnt contain versions

Issue - State: closed - Opened by mosoriob over 3 years ago
Labels: bug

#350 - build(deps): bump urllib3 from 1.25.9 to 1.26.5 in /src/mic/tests/resources/188/mic/docker

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#349 - Use regex for inputs and outputs

Issue - State: open - Opened by mosoriob over 3 years ago

#348 - fix: Component uploaded to the wrong API

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#347 - Upload files to s3

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#346 - Use fork ipython2cwl

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#345 - fix: notebooks python import

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#344 - Issue with cwltool jupyter notebook

Issue - State: closed - Opened by iperezx over 3 years ago - 6 comments

#343 - If MIC is already in a Git tracked file, uploading will not work

Issue - State: closed - Opened by dgarijo over 3 years ago - 2 comments
Labels: bug

#342 - Component uploaded to the wrong API [see last messages in issue]

Issue - State: closed - Opened by iperezx over 3 years ago - 8 comments
Labels: bug

#341 - Test pipeline before `docker logout`

Issue - State: open - Opened by mosoriob over 3 years ago
Labels: low priority, test

#340 - Prepare release Convert Ipython notebooks to model components

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#339 - Remove dame references

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#338 - fix: add outputs

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#337 - Remove references DAME

Issue - State: closed - Opened by mosoriob over 3 years ago

#336 - notebook is ignoring the output

Issue - State: open - Opened by mosoriob over 3 years ago

#335 - New feature: Convert Ipython notebooks to model components #334

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#334 - New feature: Convert Ipython notebooks to model components

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#333 - Convert Ipython jupyter notebooks to Model Component

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#332 - Provide notebooks sample repositories

Issue - State: open - Opened by mosoriob over 3 years ago

#331 - Upload cwl file to a server

Issue - State: closed - Opened by mosoriob over 3 years ago - 1 comment

#330 - build(deps): bump py from 1.8.2 to 1.10.0 in /src/mic/tests/resources/188/mic/docker

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#329 - Fix .reprozip-trace directory name

Pull Request - State: closed - Opened by remram44 over 3 years ago

#328 - Outputs wrongly detected as inputs on step 5

Issue - State: open - Opened by khider over 3 years ago
Labels: high priority, bug

#327 - Allow a user to jump back in

Issue - State: open - Opened by khider over 3 years ago
Labels: high priority, enhancement

#326 - When exposing outputs allow a user to ignore certain file types

Issue - State: open - Opened by khider over 3 years ago
Labels: enhancement, medium priority, feature_request

#325 - Migrate to github actions

Pull Request - State: closed - Opened by mosoriob over 3 years ago

#324 - Rewrite get_parameters tests

Issue - State: open - Opened by mosoriob over 3 years ago

#323 - Need to update the APIs

Issue - State: closed - Opened by khider over 3 years ago - 1 comment
Labels: bug

#322 - build(deps): bump pyyaml from 5.3.1 to 5.4 in /src/mic/tests/resources/188/mic/docker

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#321 - build(deps): bump jinja2 from 2.11.2 to 2.11.3 in /src/mic/tests/resources/188/mic/docker

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#320 - Update develop branch

Pull Request - State: closed - Opened by Cmheidelberg almost 4 years ago - 1 comment

#319 - mic in docker should be installed with the same version that the user has on their local machine

Issue - State: closed - Opened by Cmheidelberg almost 4 years ago - 2 comments
Labels: enhancement, feature_request

#318 - When starting mic, encourage to update to latest version, or update automatically

Issue - State: open - Opened by dgarijo almost 4 years ago
Labels: enhancement

#317 - Warning says dame configure, but it's dame credentials

Issue - State: closed - Opened by dgarijo almost 4 years ago - 1 comment
Labels: documentation, bug

#316 - If a model does NOT have versions but the entry exists, MIC fails

Issue - State: closed - Opened by dgarijo almost 4 years ago - 1 comment
Labels: high priority, bug

#315 - Update1.6

Pull Request - State: closed - Opened by hvarg almost 4 years ago

#314 - Update to API 1.6.0

Issue - State: closed - Opened by hvarg about 4 years ago - 1 comment

#313 - Add Documentation - How to expose input in config file?

Issue - State: open - Opened by dgarijo about 4 years ago - 2 comments
Labels: enhancement, feature_request, question

#312 - Reupload component

Issue - State: open - Opened by dgarijo about 4 years ago - 1 comment
Labels: feature_request

#311 - Add better guidance in the steps

Issue - State: closed - Opened by dgarijo about 4 years ago
Labels: documentation

#310 - Comments get repeated

Issue - State: closed - Opened by dgarijo about 4 years ago - 2 comments
Labels: bug

#309 - Autoparam fails when multiple parameters are in one line

Issue - State: open - Opened by dgarijo about 4 years ago - 1 comment
Labels: bug

#308 - Document how to do a mic component from an environment.yaml file

Issue - State: open - Opened by dgarijo about 4 years ago - 1 comment
Labels: documentation, enhancement, feature_request

#307 - Wrong parsing of parameters

Issue - State: open - Opened by mosoriob about 4 years ago - 1 comment
Labels: bug

#306 - No such file or directory for HAND-TauDEM

Issue - State: open - Opened by dhardestylewis about 4 years ago - 2 comments
Labels: bug

#305 - No such file or directory for DISH

Issue - State: open - Opened by dhardestylewis about 4 years ago - 3 comments
Labels: bug

#304 - Executables file

Pull Request - State: closed - Opened by mosoriob about 4 years ago - 1 comment

#303 - Fix: inputs bug for SWAT model

Pull Request - State: closed - Opened by Cmheidelberg about 4 years ago - 1 comment

#302 - Encoding issues lead to exceptions

Issue - State: closed - Opened by dgarijo about 4 years ago - 2 comments
Labels: bug

#301 - Cannot create SWAT component

Issue - State: closed - Opened by dgarijo about 4 years ago - 6 comments
Labels: high priority, bug

#300 - MIC fails when the folder has spaces in its name

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: bug

#299 - If a custom image is selected, MIC should be downloaded

Issue - State: closed - Opened by dgarijo over 4 years ago - 1 comment
Labels: documentation, bug, feature_request

#298 - If a component starts with a capital letter, MIC fails

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: bug

#297 - Fix: start thinks mic dir exists every time

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment

#296 - [TEST] Create test for adding custom inputs

Issue - State: open - Opened by Cmheidelberg over 4 years ago - 1 comment
Labels: feature_request, test

#295 - Fix: replace hyphens with underscore for yaml input direcory names

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment

#294 - Develop

Pull Request - State: closed - Opened by mosoriob over 4 years ago

#293 - files with hyphen in yaml causes issues with run

Issue - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment
Labels: bug

#292 - [upload command] show a link to edit the metadata (variables) of the model configuration

Issue - State: open - Opened by mosoriob over 4 years ago - 1 comment
Labels: feature_request

#291 - Fix: use shlex instead of split by space to keep quoted strings

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment

#290 - Param auto detector will detect "multiple words in quotes" as several parameters

Issue - State: closed - Opened by Cmheidelberg over 4 years ago - 2 comments
Labels: easy to fix, bug

#289 - Add reprozip contents in mic folder

Issue - State: open - Opened by dgarijo over 4 years ago - 1 comment
Labels: enhancement, low priority, feature_request

#288 - String parameters in commands fail in components due to extra quotes.

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: high priority, bug

#287 - mintproject/generic:latest is not up to date

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: enhancement

#286 - fix: convert CRLF to LF

Pull Request - State: closed - Opened by mosoriob over 4 years ago

#285 - start command fails with python

Issue - State: closed - Opened by Cmheidelberg over 4 years ago - 2 comments
Labels: bug

#284 - If the requerimients.txt contains uninstallable packages, mic fails

Issue - State: closed - Opened by mosoriob over 4 years ago - 2 comments
Labels: bug

#283 - Windowsfix

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment

#282 - Revert "Windowsfix"

Pull Request - State: closed - Opened by mosoriob over 4 years ago

#281 - Windowsfix

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment

#280 - Edit: add mic.log field to bug report template (#279)

Pull Request - State: closed - Opened by mosoriob over 4 years ago

#279 - Edit: add mic.log field to bug report template

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 1 comment

#278 - fix: cleaning code

Pull Request - State: closed - Opened by mosoriob over 4 years ago - 1 comment

#277 - Synchronize MIC in images

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: feature_request

#268 - missing exit message trace command

Issue - State: closed - Opened by mosoriob over 4 years ago - 1 comment
Labels: feature_request

#266 - MIC is not working in WINDOWS

Issue - State: closed - Opened by dgarijo over 4 years ago - 3 comments
Labels: high priority, bug

#264 - Reconnect to container

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: enhancement, feature_request

#261 - When using MIC on a tracked Github repo, MIC produces an exception on load

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: bug

#257 - Executables

Pull Request - State: closed - Opened by Cmheidelberg over 4 years ago - 7 comments

#246 - Let users remove inputs/ outputs using the input/ output command

Issue - State: closed - Opened by Cmheidelberg over 4 years ago - 2 comments
Labels: feature_request

#235 - verify if docker is running

Issue - State: closed - Opened by mosoriob over 4 years ago - 1 comment

#211 - [publish] add option to publish the data

Issue - State: closed - Opened by mosoriob over 4 years ago - 2 comments
Labels: feature_request

#210 - show progress git push

Issue - State: closed - Opened by mosoriob over 4 years ago - 2 comments
Labels: feature_request

#207 - framework is saved as a python object in the mic.yaml

Issue - State: closed - Opened by mosoriob over 4 years ago - 1 comment
Labels: bug

#202 - feat detect parameters in the invocation line

Issue - State: closed - Opened by mosoriob over 4 years ago - 2 comments
Labels: feature_request

#200 - [Discussion] MIC asks me if something is code, but does not ask if I want to expose an input

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: documentation, question

#199 - Detect common code extension files as code

Issue - State: closed - Opened by dgarijo over 4 years ago - 5 comments
Labels: enhancement, easy to fix, feature_request

#186 - [python] 1i, 1o, 1p using dependencies

Issue - State: closed - Opened by mosoriob over 4 years ago - 1 comment
Labels: test

#183 - allow add maxvalue and minvalue to float and integer

Issue - State: open - Opened by mosoriob over 4 years ago - 1 comment
Labels: medium priority, feature_request

#177 - Add image for R

Issue - State: closed - Opened by dgarijo over 4 years ago - 2 comments
Labels: enhancement, low priority, feature_request

#175 - Upload model executions as Configuration Setups

Issue - State: open - Opened by dgarijo over 4 years ago - 2 comments
Labels: enhancement, low priority, feature_request

#173 - extract dependencies if the execution is a success

Issue - State: closed - Opened by mosoriob over 4 years ago - 1 comment
Labels: feature_request

#128 - Remove add models, modelversions and model configurations

Issue - State: closed - Opened by mosoriob over 4 years ago - 12 comments
Labels: high priority, easy to fix

#112 - what does mintproject/generic have installed?

Issue - State: open - Opened by dgarijo over 4 years ago
Labels: documentation, enhancement, low priority

#101 - In the documentation, specify how long is it a step required (estimation)

Issue - State: open - Opened by dgarijo over 4 years ago
Labels: enhancement, low priority