miicTeam/miic_R_package issues and pull requests

#135 - What is the minimal sample size required to run MIIC?

Issue - State: open - Opened by guodudou2 5 months ago - 3 comments
Labels: question

#134 - MIIC v2.0.3: changes required by CRAN

Pull Request - State: closed - Opened by franck-simon 5 months ago

#133 - MIIC v2.0.1: Preparation of CRAN update submission, group all breaking changes.

Pull Request - State: closed - Opened by franck-simon 6 months ago - 1 comment

#132 - Opposite true edges issue

Issue - State: closed - Opened by franck-simon 8 months ago - 1 comment
Labels: bug

#131 - Miic v2 (tmiic)

Pull Request - State: closed - Opened by franck-simon 9 months ago

#130 - Addition of temporal stationary mode

Pull Request - State: closed - Opened by franck-simon over 1 year ago

#129 - Review input parameters check

Pull Request - State: closed - Opened by franck-simon over 1 year ago - 1 comment
Labels: enhancement

#128 - Implementation of consequence variables

Pull Request - State: closed - Opened by franck-simon almost 2 years ago

#127 - Fix of issue 125

Pull Request - State: closed - Opened by franck-simon almost 2 years ago
Labels: bug, minor

#126 - Are there descriptions to the lines connecting the nodes?

Issue - State: closed - Opened by KevinZhou-hub almost 2 years ago - 3 comments
Labels: documentation

#125 - Error in discretizeMutual when matrix_u has 10 dimensions

Issue - State: closed - Opened by ylincen over 2 years ago - 1 comment
Labels: bug

#124 - Fix edges color when partial_cor < 0 and issue 75

Pull Request - State: closed - Opened by franck-simon over 2 years ago

#123 - Revert "Use threadprivate and raw pointer for li_alloc_ptr"

Pull Request - State: closed - Opened by mribeirodantas over 2 years ago - 1 comment

#122 - Check error on Windows

Issue - State: closed - Opened by honghaoli42 over 2 years ago - 2 comments

#121 - Rerurn checks on master

Pull Request - State: closed - Opened by franck-simon over 2 years ago

#120 - Discretization takes care of duplicated values for cuts

Pull Request - State: closed - Opened by franck-simon over 2 years ago

#119 - Discretization results vary depending on row order when dataset contains repeated values

Issue - State: closed - Opened by franck-simon over 2 years ago
Labels: enhancement

#118 - Restrict possible causes

Issue - State: closed - Opened by mribeirodantas over 2 years ago
Labels: enhancement

#117 - Add latest publication

Pull Request - State: closed - Opened by mribeirodantas almost 3 years ago

#116 - Func compute info

Pull Request - State: closed - Opened by honghaoli42 about 3 years ago

#115 - Adjust definition of contribution.

Pull Request - State: closed - Opened by honghaoli42 about 3 years ago

#114 - Error in summarizeResults when infered network has no edge

Issue - State: closed - Opened by franck-simon over 3 years ago - 1 comment
Labels: bug, good first issue, minor

#113 - MIIC summary table and documentation cleanup

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago - 1 comment

#112 - Output cleanup

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago - 1 comment

#111 - Fix edges initialization.

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago

#110 - Redefine the skeleton consistency algorithm.

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago

#109 - Non negative i prime

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago

#108 - Fix one bin

Pull Request - State: closed - Opened by vcabeli over 3 years ago

#107 - Non negative i prime

Pull Request - State: closed - Opened by vcabeli over 3 years ago - 1 comment

#106 - fix re-use cutpoints, see #105

Pull Request - State: closed - Opened by vcabeli over 3 years ago

#105 - Unexpected behaviors when re-using cutpoints

Issue - State: closed - Opened by vcabeli over 3 years ago

#104 - Proper handling of state_order file

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago

#103 - Refactor orientation probability functions

Pull Request - State: closed - Opened by honghaoli42 over 3 years ago

#102 - Changed U bins initialization and re-use cutpoints when CMI is negative

Pull Request - State: closed - Opened by vcabeli over 3 years ago

#101 - Negative CMI with continuous Zs

Issue - State: closed - Opened by vcabeli over 3 years ago

#100 - Incorrect choice of candidate conditioning node with zero score

Issue - State: closed - Opened by honghaoli42 over 3 years ago
Labels: bug

#99 - Different behavior of mutual information computations for weighted samples of continuous/discrete variables.

Issue - State: closed - Opened by honghaoli42 over 3 years ago
Labels: bug

#98 - Fix #97 issue: n_eff value wrongly rounded

Pull Request - State: closed - Opened by franck-simon over 3 years ago

#97 - N_eff value can be wrongly shifted by 1 when computing mutual information

Issue - State: closed - Opened by franck-simon over 3 years ago - 1 comment
Labels: bug

#96 - Make it illegal to condition on a node's past to remove edges with contextual nodes

Pull Request - State: closed - Opened by vcabeli almost 4 years ago

#95 - "var_type" not present in the state order file generates an error while "var_type" is documented as optional

Issue - State: closed - Opened by franck-simon almost 4 years ago

#94 - Modify orientation rules to accommodate forced orientations

Pull Request - State: closed - Opened by honghaoli42 almost 4 years ago - 1 comment

#93 - Contextual flag no longer assumes variable order.

Pull Request - State: closed - Opened by honghaoli42 almost 4 years ago

#92 - Variable order in input file is not necessarily preserved in state order file

Issue - State: closed - Opened by honghaoli42 almost 4 years ago
Labels: bug

#91 - Variables having no information are kept when NAs are present

Issue - State: closed - Opened by franck-simon about 4 years ago - 2 comments
Labels: bug

#90 - Rework consensus graph and causal status.

Pull Request - State: closed - Opened by honghaoli42 about 4 years ago

#89 - Comparison scheme to choose a top Z in case of ties

Pull Request - State: closed - Opened by vcabeli about 4 years ago

#88 - Update documentation/comments in source code

Issue - State: closed - Opened by mribeirodantas about 4 years ago
Labels: documentation

#87 - Add is_contextual parameter

Pull Request - State: closed - Opened by honghaoli42 about 4 years ago

#86 - Add edge confidence colomn to edges summary, rename log_confidence to info_shifted

Pull Request - State: closed - Opened by honghaoli42 about 4 years ago

#85 - Adds new rule to error column in orientation probabilities file.

Pull Request - State: closed - Opened by mribeirodantas about 4 years ago
Labels: enhancement

#84 - Fix incorrect initialization of maxbins and initbins

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#83 - Fix iGraph export when no edge is present

Pull Request - State: closed - Opened by franck-simon over 4 years ago

#82 - Force time interval between user interrupt checks.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#81 - Proper sufficient conditions for `is_causal`

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#80 - Sufficient conditions for `is_causal`

Issue - State: closed - Opened by honghaoli42 over 4 years ago - 1 comment
Labels: enhancement, minor, task

#79 - Let Edge represent separate arrow tip status.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#78 - Information computation with sample weights

Issue - State: closed - Opened by vcabeli over 4 years ago - 1 comment

#77 - Refactor data passage between R and C++

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#76 - Addition of temporal mode

Pull Request - State: closed - Opened by franck-simon over 4 years ago - 1 comment

#75 - Edge colors are likely to be shifted in iGraph when one edge pcor < 0 and close to 0

Issue - State: closed - Opened by franck-simon over 4 years ago
Labels: bug

#74 - Code refactoring of information computation

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#73 - Asymmetrical conditions during the iteration in the function `computeIxy`

Issue - State: closed - Opened by honghaoli42 over 4 years ago

#72 - Different initial cuts for conditioning nodes during discretization

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: minor

#71 - Fix wrong `lbin` value during cuts initialization.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#70 - Incorrect bin length during the initialization of cut points

Issue - State: closed - Opened by honghaoli42 over 4 years ago - 1 comment
Labels: bug, minor

#69 - Fix wrong number of levels ater resetCutPointsU.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#68 - Incorrect number of levels after resetting cut points with extremely small sample size

Issue - State: closed - Opened by honghaoli42 over 4 years ago - 1 comment
Labels: bug, minor

#67 - Fixes observed levels not matching provided levels

Pull Request - State: closed - Opened by vcabeli over 4 years ago

#66 - Fixes igraph object not having correct orientations

Pull Request - State: closed - Opened by vcabeli over 4 years ago

#65 - Igraph objects are not created correctly

Issue - State: closed - Opened by vcabeli over 4 years ago

#64 - Missing partial correlation for non-numeric variables

Issue - State: closed - Opened by honghaoli42 over 4 years ago - 1 comment
Labels: minor

#63 - C++ code refactoring

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago - 2 comments
Labels: major

#62 - Over restrictive edge status merging policy in the consistent (union) graph.

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: task

#61 - When using Windows, default font of igraph plots generates warnings

Issue - State: closed - Opened by franck-simon over 4 years ago - 1 comment

#60 - Documentation of miic function is no more valid after changes to the plot feature

Issue - State: closed - Opened by franck-simon over 4 years ago - 3 comments

#59 - Wrong defaults in miic.r and miic.reconstruct.r

Issue - State: closed - Opened by franck-simon over 4 years ago - 4 comments
Labels: trivial

#58 - `getAllInfoNEW` gives wrong information when `nbrLevCorrect[0] == N_xy_ui || nbrLevCorrect[1] == N_xy_ui)`

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, major

#57 - New feedback for CRAN 1.5.0 submission

Issue - State: closed - Opened by vcabeli over 4 years ago - 1 comment

#56 - `getAllInfoNEW` gives wrong 3point Info when `level[x] <= 1` or `level[y] <= 1`

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, minor

#55 - Bug in function `getI3`

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, critical

#54 - Missing test MAR for continuous variables in `computeEnsInformationContinuous_Orientation`

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, major

#53 - `getAllInfoNEW` gives wrong 3point Info when Z fails test.

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, major

#52 - Bug in the computation of score of candidate separating node for discrete variables

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, minor

#51 - Check for invalid Z node index return.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#50 - Possible UB of vector operator[] when MAR test fails

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug

#49 - Refactor function compute_partial_correlation()

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#48 - Long post processing time by function summarizeResults()

Issue - State: closed - Opened by honghaoli42 over 4 years ago - 2 comments
Labels: task, trivial

#47 - Reworked plot functionality

Pull Request - State: closed - Opened by vcabeli over 4 years ago - 1 comment

#46 - Avoid repeating computation of confidence.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#45 - Replace recursion with dynamic programming in logC computation

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#44 - Fix dimention check on NULL

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#43 - Replace res$adj_consensus with summary$consensus

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#42 - Consensus graph

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#41 - Remove verbose output messages in parallel blocks

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#40 - Error running example on CRAN's Solaris

Issue - State: closed - Opened by honghaoli42 over 4 years ago - 7 comments
Labels: bug, help wanted

#39 - Honghao/refactor

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#38 - Broken verbose parameter with Rcout and multi threading

Issue - State: closed - Opened by honghaoli42 over 4 years ago
Labels: bug, critical

#37 - Fix wrong column name, update documentation.

Pull Request - State: closed - Opened by honghaoli42 over 4 years ago

#36 - Plots are too small or don't contain edges

Issue - State: closed - Opened by gcoter over 4 years ago - 4 comments
Labels: bug

GitHub / miicTeam/miic_R_package issues and pull requests