Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / microsoft/ga4gh-tes issues and pull requests
#400 - [399] File output is uploaded to the target URL as is when the path is an existing file
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#399 - Target URL is incorrect for output
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#398 - Add CoA Integration test to TES
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
- 1 comment
Labels: enhancement, tobegroomed, Testing
#397 - Update how tes compliance suite tests are run
Issue -
State: closed - Opened by yuliadub about 1 year ago
Labels: tobegroomed, Usability, Size: small
#396 - Create factory method for TesTask creation
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: tobegroomed, TES Priority: P3, Code Quality Improvements
#395 - RepositoryCollisionException are unhandled in TES task cancellation and TES task ID not sanitized
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#394 - Add Conflict Response for Repository Collisions in Task Cancellation
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
- 1 comment
#393 - TES compliance suite builds but fails to run
Issue -
State: closed - Opened by BMurri about 1 year ago
- 1 comment
Labels: bug, tobegroomed, Code Quality Improvements
#392 - Rename Martha~ to something like DrsResolver
Issue -
State: open - Opened by BMurri about 1 year ago
Labels: up for grabs, TES Priority: P3, Code Quality Improvements, good first issue
#391 - DRS Locator container image has changed the name of the env vars to access the DRS location service
Issue -
State: closed - Opened by BMurri about 1 year ago
- 1 comment
Labels: bug
#390 - Fix DRS resolver env var name
Pull Request -
State: closed - Opened by jgainerdewar about 1 year ago
- 6 comments
#389 - Test fails because pricing page length was hard-coded
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#388 - Remove hard-coded length from failing price API tests
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#387 - Azure Batch Resource Files occasionally timeout when downloading TES runner under load
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#386 - Use wget instead of Batch's resource files for file downloads
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#385 - [384] Combined URL transformation strategies and refactoring
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#384 - Combined URL transformation strategies for inputs and outputs
Issue -
State: closed - Opened by giventocode about 1 year ago
#381 - Fix code scanning alert - Log entries created from user input
Issue -
State: open - Opened by BMurri about 1 year ago
Labels: bug, TES Priority: P3, Robustness
#380 - [379] Standard error and standard outputs are read asynchronously when a subprocess is launched.
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#379 - Runner may hang with large standard output or standard error values when launching download/upload subprocess
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#378 - Consolidate packages across solutions
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#377 - TES shall gracefully recover from any previous state
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: Investigation, tobegroomed, TES Priority: P2, Code Quality Improvements
#376 - [364] Volume mappings for node TES task inputs and outputs
Pull Request -
State: closed - Opened by giventocode about 1 year ago
- 1 comment
#375 - [367] Removes path-prefix property from the runner and TES task model
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#374 - Separate usages of Url and Path when locating write_*() files and skip files that have duplicate paths
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#373 - Task fails when running on Terra when a WDL uses write_lines()
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#372 - Ensure queries fully run in deployer and ensure failures exit quickly
Pull Request -
State: closed - Opened by BMurri about 1 year ago
- 1 comment
#371 - [369] Remove starting slash from the blobname when internal path prefix is used
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#370 - Research if Docker pulls images before the start task runs
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
- 3 comments
Labels: investigation
#369 - TesTask.json is uploaded to the incorrect location when running on Terra
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#368 - Cleanup CancellationToken forwards
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#367 - Remove path_prefix property from the runner and TES model
Issue -
State: closed - Opened by giventocode about 1 year ago
- 1 comment
#366 - [149] SAS resolution strategy for Terra
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#365 - Fix dependencies
Pull Request -
State: closed - Opened by jsaun about 1 year ago
#364 - Add volume mounting bindings to the command execution via the TES runner
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: tobegroomed
#363 - Move all Batch node initialization and clean-up operations to the runner
Issue -
State: open - Opened by giventocode about 1 year ago
- 2 comments
Labels: tobegroomed
#362 - SAS token used for start-task logs is incorrect in Terra
Issue -
State: closed - Opened by BMurri about 1 year ago
Labels: bug
#361 - Append TES Tasks to a JSONL file
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: enhancement, tobegroomed, TES Priority: P3, Troubleshooting
#360 - Append tes tasks to JSONL
Pull Request -
State: open - Opened by MattMcL4475 about 1 year ago
#359 - Ensure container SAS is returned in Terra for uploading start-task logs
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#358 - Compact identifier DRS URIs should be cached in TES
Issue -
State: open - Opened by BMurri about 1 year ago
- 1 comment
Labels: Performance
#357 - [356] Executor handles empty output list after resolution
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#356 - Runner fails when pattern search does not return files
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#355 - Report download metrics
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#354 - Task Runner ignores InputsMetricsFormat
Issue -
State: closed - Opened by BMurri about 1 year ago
Labels: bug
#353 - Protect against command jailbreaking the executor container
Pull Request -
State: closed - Opened by BMurri about 1 year ago
- 1 comment
#352 - Command needs to be quoted to be scoped to run within the container
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#351 - Change the way we access the start-task console logs
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#350 - "Total reclaimed space: 0B" after deleting images
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
- 3 comments
Labels: bug, Observability
#349 - compgen not working as expected; results in error in stderr.txt
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
- 1 comment
Labels: bug
#348 - [347] Container SAS token is generated for internal TES URLs
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#347 - The SAS token for the cloud task file output fails in Terra
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#346 - Add support for using a managed identity to connect to Azure Database for PostgreSQL
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: enhancement, TES Priority: P1, Usability
#345 - When Batch scale up is stalled due to no quota, log a message in TES logs every 1 hour
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: bug, TES Priority: P1, Observability
#344 - [343] Task output file supports TES internal location in Terra
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#343 - File outputs destination for cloud task is incorrect when TES is running on Terra
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#342 - List tasks by tag
Pull Request -
State: open - Opened by MattMcL4475 about 1 year ago
- 1 comment
#341 - Include pricing info in vm metadata from BatchSupportedVmSizeInformation.json
Issue -
State: closed - Opened by jsaun about 1 year ago
- 1 comment
Labels: enhancement
#340 - [145-1] API clients moved to their own project
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#339 - Start tasks are not always configuring docker correctly
Issue -
State: closed - Opened by BMurri about 1 year ago
Labels: bug
#338 - Improve List Task Capability: Set "workflow_id" as a tag on the TES task
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: enhancement, TES Priority: P2, Usability
#337 - Implement ListTasks by tag_key
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
- 2 comments
Labels: enhancement, TES Priority: P2, Usability, Size: small
#336 - Rename ListTasks namePrefix to name_prefix for spec compliance
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
- 1 comment
Labels: bug, tobegroomed, TES Priority: P2, Usability, Size: small
#335 - Unused containers/files should be removed and configuration consolidated
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: up for grabs, TES Priority: P2, Code Quality Improvements
#334 - Implement TES spec stdout/stderr options
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
Labels: Investigation, tobegroomed, TES Priority: P3
#333 - Use kubectl port forward to run the validation test task rather than the ingress
Issue -
State: closed - Opened by jsaun about 1 year ago
Labels: bug, enhancement
#332 - Use kubectl port-forward instead of ingress for integration test
Pull Request -
State: closed - Opened by jsaun about 1 year ago
#331 - [330] Added missing enum values to API request models to create Batch pools via WSM
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#330 - TES fails to create a Batch pool in Terra when a start task is specified
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#329 - Developer tool to standup failed task environment
Issue -
State: open - Opened by BMurri about 1 year ago
- 5 comments
Labels: enhancement, needs discussion, TES Priority: P2, Troubleshooting
#328 - Deployment test task fails in main
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
- 1 comment
Labels: bug
#327 - Deployer should write tes task to console on failure
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#326 - Write testask to console on deployment failure
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#325 - Regression in TES on Terra in main that fails all tasks
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug, external
#324 - Always use URL when available when requesting SAS-token for blobs/etc
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#323 - Always upload standard out and standard error
Issue -
State: open - Opened by MattMcL4475 about 1 year ago
- 1 comment
Labels: enhancement
#322 - Always upload standard out and standard error, even on success
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#321 - Sort the RegionsAvailable in ascending order for easier reading in BatchSupportedVmSizeInformation.json
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#320 - Sort the RegionsAvailable in ascending order for easier reading in BatchSupportedVmSizeInformation.json
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#319 - Update VM list to latest
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#318 - Update src/TesApi.Web/BatchSupportedVmSizeInformation.json
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#317 - [316] Use IOptions<BatchSchedulingOptions> wrapper instead BatchSchedulingOptions in the Terra Storage provider
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#316 - TES Fails to start when running in Terra
Issue -
State: closed - Opened by giventocode about 1 year ago
Labels: bug
#315 - Remove unused csproj file
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
- 1 comment
#314 - Local build fails with "Duplicate 'global::System.Runtime.Versioning.TargetFrameworkAttribute' attribute "
Issue -
State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug
#313 - Batch pools can get "stuck" on a resize that resulted in errors (usually due to quota) and forget to retry on the next clock
Issue -
State: open - Opened by BMurri about 1 year ago
Labels: bug, external, TES Priority: P1, Robustness
#312 - Get starttask logs and fix start-task for docker configuration
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#310 - Docker daemon has misconfigured data root on Batch
Pull Request -
State: closed - Opened by MattMcL4475 about 1 year ago
#307 - Sanitize user-supplied input to the docker containers
Issue -
State: open - Opened by BMurri about 1 year ago
Labels: Investigation, TES Priority: P3
#302 - [145] Azure resource manager SAS resolution for inputs and outputs.
Pull Request -
State: closed - Opened by giventocode about 1 year ago
#299 - Complete implementation of POSIX glob in node task runner's uploader
Issue -
State: open - Opened by BMurri about 1 year ago
- 1 comment
Labels: Investigation, tobegroomed, TES Priority: P3, Not Do?
#294 - Add support for using a managed identity to connect to Azure Database for PostgreSQL
Pull Request -
State: open - Opened by MattMcL4475 about 1 year ago
#287 - Improve troubleshooting experience for integration tests
Issue -
State: open - Opened by giventocode about 1 year ago
Labels: needs discussion, tobegroomed, TES Priority: P2, Testing
#280 - Improve Terra storage account compatibility
Pull Request -
State: closed - Opened by BMurri about 1 year ago
#279 - [#148 Implement TES Task Runner]Private container registry handling through the runner
Issue -
State: closed - Opened by ngambani about 1 year ago
- 1 comment
Labels: enhancement, TES Priority: P2
#274 - Ability to specify input and output files with az:// prefix
Issue -
State: open - Opened by MattMcL4475 over 1 year ago
- 6 comments
Labels: enhancement, TES Priority: P3, Usability
#269 - Batch tasks sometimes can't be deleted for several minutes.
Issue -
State: open - Opened by BMurri over 1 year ago
- 2 comments
Labels: bug, TES Priority: P2, Robustness
#260 - Disk encryption at host
Pull Request -
State: closed - Opened by jsaun over 1 year ago
#255 - [#7 TES 1.1 Spec compliance] Update Service Info to identify 1.1 spec
Issue -
State: open - Opened by vsmalladi over 1 year ago
Labels: linked issue, TES Priority: P3
#254 - [#7 TES 1.1 Spec compliance] Update TES compliance suite to 1.1
Issue -
State: open - Opened by vsmalladi over 1 year ago
Labels: linked issue, TES Priority: P3