Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microsoft/ga4gh-tes issues and pull requests

#399 - Target URL is incorrect for output

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#398 - Add CoA Integration test to TES

Issue - State: closed - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: enhancement, tobegroomed, Testing

#397 - Update how tes compliance suite tests are run

Issue - State: closed - Opened by yuliadub about 1 year ago
Labels: tobegroomed, Usability, Size: small

#396 - Create factory method for TesTask creation

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: tobegroomed, TES Priority: P3, Code Quality Improvements

#394 - Add Conflict Response for Repository Collisions in Task Cancellation

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago - 1 comment

#393 - TES compliance suite builds but fails to run

Issue - State: closed - Opened by BMurri about 1 year ago - 1 comment
Labels: bug, tobegroomed, Code Quality Improvements

#392 - Rename Martha~ to something like DrsResolver

Issue - State: open - Opened by BMurri about 1 year ago
Labels: up for grabs, TES Priority: P3, Code Quality Improvements, good first issue

#391 - DRS Locator container image has changed the name of the env vars to access the DRS location service

Issue - State: closed - Opened by BMurri about 1 year ago - 1 comment
Labels: bug

#390 - Fix DRS resolver env var name

Pull Request - State: closed - Opened by jgainerdewar about 1 year ago - 6 comments

#389 - Test fails because pricing page length was hard-coded

Issue - State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug

#388 - Remove hard-coded length from failing price API tests

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#386 - Use wget instead of Batch's resource files for file downloads

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#385 - [384] Combined URL transformation strategies and refactoring

Pull Request - State: closed - Opened by giventocode about 1 year ago

#381 - Fix code scanning alert - Log entries created from user input

Issue - State: open - Opened by BMurri about 1 year ago
Labels: bug, TES Priority: P3, Robustness

#378 - Consolidate packages across solutions

Pull Request - State: closed - Opened by BMurri about 1 year ago

#377 - TES shall gracefully recover from any previous state

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: Investigation, tobegroomed, TES Priority: P2, Code Quality Improvements

#376 - [364] Volume mappings for node TES task inputs and outputs

Pull Request - State: closed - Opened by giventocode about 1 year ago - 1 comment

#373 - Task fails when running on Terra when a WDL uses write_lines()

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#372 - Ensure queries fully run in deployer and ensure failures exit quickly

Pull Request - State: closed - Opened by BMurri about 1 year ago - 1 comment

#370 - Research if Docker pulls images before the start task runs

Issue - State: closed - Opened by MattMcL4475 about 1 year ago - 3 comments
Labels: investigation

#369 - TesTask.json is uploaded to the incorrect location when running on Terra

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#368 - Cleanup CancellationToken forwards

Pull Request - State: closed - Opened by BMurri about 1 year ago

#367 - Remove path_prefix property from the runner and TES model

Issue - State: closed - Opened by giventocode about 1 year ago - 1 comment

#366 - [149] SAS resolution strategy for Terra

Pull Request - State: closed - Opened by giventocode about 1 year ago

#365 - Fix dependencies

Pull Request - State: closed - Opened by jsaun about 1 year ago

#364 - Add volume mounting bindings to the command execution via the TES runner

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: tobegroomed

#363 - Move all Batch node initialization and clean-up operations to the runner

Issue - State: open - Opened by giventocode about 1 year ago - 2 comments
Labels: tobegroomed

#362 - SAS token used for start-task logs is incorrect in Terra

Issue - State: closed - Opened by BMurri about 1 year ago
Labels: bug

#361 - Append TES Tasks to a JSONL file

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: enhancement, tobegroomed, TES Priority: P3, Troubleshooting

#360 - Append tes tasks to JSONL

Pull Request - State: open - Opened by MattMcL4475 about 1 year ago

#359 - Ensure container SAS is returned in Terra for uploading start-task logs

Pull Request - State: closed - Opened by BMurri about 1 year ago

#358 - Compact identifier DRS URIs should be cached in TES

Issue - State: open - Opened by BMurri about 1 year ago - 1 comment
Labels: Performance

#357 - [356] Executor handles empty output list after resolution

Pull Request - State: closed - Opened by giventocode about 1 year ago

#356 - Runner fails when pattern search does not return files

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#355 - Report download metrics

Pull Request - State: closed - Opened by BMurri about 1 year ago

#354 - Task Runner ignores InputsMetricsFormat

Issue - State: closed - Opened by BMurri about 1 year ago
Labels: bug

#353 - Protect against command jailbreaking the executor container

Pull Request - State: closed - Opened by BMurri about 1 year ago - 1 comment

#352 - Command needs to be quoted to be scoped to run within the container

Issue - State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug

#351 - Change the way we access the start-task console logs

Pull Request - State: closed - Opened by BMurri about 1 year ago

#350 - "Total reclaimed space: 0B" after deleting images

Issue - State: open - Opened by MattMcL4475 about 1 year ago - 3 comments
Labels: bug, Observability

#349 - compgen not working as expected; results in error in stderr.txt

Issue - State: closed - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: bug

#348 - [347] Container SAS token is generated for internal TES URLs

Pull Request - State: closed - Opened by giventocode about 1 year ago

#347 - The SAS token for the cloud task file output fails in Terra

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#346 - Add support for using a managed identity to connect to Azure Database for PostgreSQL

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: enhancement, TES Priority: P1, Usability

#345 - When Batch scale up is stalled due to no quota, log a message in TES logs every 1 hour

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: bug, TES Priority: P1, Observability

#344 - [343] Task output file supports TES internal location in Terra

Pull Request - State: closed - Opened by giventocode about 1 year ago

#342 - List tasks by tag

Pull Request - State: open - Opened by MattMcL4475 about 1 year ago - 1 comment

#341 - Include pricing info in vm metadata from BatchSupportedVmSizeInformation.json

Issue - State: closed - Opened by jsaun about 1 year ago - 1 comment
Labels: enhancement

#340 - [145-1] API clients moved to their own project

Pull Request - State: closed - Opened by giventocode about 1 year ago

#339 - Start tasks are not always configuring docker correctly

Issue - State: closed - Opened by BMurri about 1 year ago
Labels: bug

#338 - Improve List Task Capability: Set "workflow_id" as a tag on the TES task

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: enhancement, TES Priority: P2, Usability

#337 - Implement ListTasks by tag_key

Issue - State: open - Opened by MattMcL4475 about 1 year ago - 2 comments
Labels: enhancement, TES Priority: P2, Usability, Size: small

#336 - Rename ListTasks namePrefix to name_prefix for spec compliance

Issue - State: open - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: bug, tobegroomed, TES Priority: P2, Usability, Size: small

#335 - Unused containers/files should be removed and configuration consolidated

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: up for grabs, TES Priority: P2, Code Quality Improvements

#334 - Implement TES spec stdout/stderr options

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: Investigation, tobegroomed, TES Priority: P3

#333 - Use kubectl port forward to run the validation test task rather than the ingress

Issue - State: closed - Opened by jsaun about 1 year ago
Labels: bug, enhancement

#332 - Use kubectl port-forward instead of ingress for integration test

Pull Request - State: closed - Opened by jsaun about 1 year ago

#330 - TES fails to create a Batch pool in Terra when a start task is specified

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#329 - Developer tool to standup failed task environment

Issue - State: open - Opened by BMurri about 1 year ago - 5 comments
Labels: enhancement, needs discussion, TES Priority: P2, Troubleshooting

#328 - Deployment test task fails in main

Issue - State: closed - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: bug

#327 - Deployer should write tes task to console on failure

Issue - State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug

#326 - Write testask to console on deployment failure

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#325 - Regression in TES on Terra in main that fails all tasks

Issue - State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug, external

#324 - Always use URL when available when requesting SAS-token for blobs/etc

Pull Request - State: closed - Opened by BMurri about 1 year ago

#323 - Always upload standard out and standard error

Issue - State: open - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: enhancement

#322 - Always upload standard out and standard error, even on success

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#319 - Update VM list to latest

Issue - State: closed - Opened by MattMcL4475 about 1 year ago
Labels: bug

#318 - Update src/TesApi.Web/BatchSupportedVmSizeInformation.json

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#316 - TES Fails to start when running in Terra

Issue - State: closed - Opened by giventocode about 1 year ago
Labels: bug

#315 - Remove unused csproj file

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago - 1 comment

#313 - Batch pools can get "stuck" on a resize that resulted in errors (usually due to quota) and forget to retry on the next clock

Issue - State: open - Opened by BMurri about 1 year ago
Labels: bug, external, TES Priority: P1, Robustness

#312 - Get starttask logs and fix start-task for docker configuration

Pull Request - State: closed - Opened by BMurri about 1 year ago

#310 - Docker daemon has misconfigured data root on Batch

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#307 - Sanitize user-supplied input to the docker containers

Issue - State: open - Opened by BMurri about 1 year ago
Labels: Investigation, TES Priority: P3

#302 - [145] Azure resource manager SAS resolution for inputs and outputs.

Pull Request - State: closed - Opened by giventocode about 1 year ago

#299 - Complete implementation of POSIX glob in node task runner's uploader

Issue - State: open - Opened by BMurri about 1 year ago - 1 comment
Labels: Investigation, tobegroomed, TES Priority: P3, Not Do?

#287 - Improve troubleshooting experience for integration tests

Issue - State: open - Opened by giventocode about 1 year ago
Labels: needs discussion, tobegroomed, TES Priority: P2, Testing

#280 - Improve Terra storage account compatibility

Pull Request - State: closed - Opened by BMurri about 1 year ago

#279 - [#148 Implement TES Task Runner]Private container registry handling through the runner

Issue - State: closed - Opened by ngambani about 1 year ago - 1 comment
Labels: enhancement, TES Priority: P2

#274 - Ability to specify input and output files with az:// prefix

Issue - State: open - Opened by MattMcL4475 over 1 year ago - 6 comments
Labels: enhancement, TES Priority: P3, Usability

#269 - Batch tasks sometimes can't be deleted for several minutes.

Issue - State: open - Opened by BMurri over 1 year ago - 2 comments
Labels: bug, TES Priority: P2, Robustness

#260 - Disk encryption at host

Pull Request - State: closed - Opened by jsaun over 1 year ago

#255 - [#7 TES 1.1 Spec compliance] Update Service Info to identify 1.1 spec

Issue - State: open - Opened by vsmalladi over 1 year ago
Labels: linked issue, TES Priority: P3

#254 - [#7 TES 1.1 Spec compliance] Update TES compliance suite to 1.1

Issue - State: open - Opened by vsmalladi over 1 year ago
Labels: linked issue, TES Priority: P3