microsoft/ga4gh-tes issues and pull requests

#750 - Fix failure to overwrite blobs

Pull Request - State: closed - Opened by BMurri 7 months ago
Labels: bug, TES Priority: P1, Size: small

#749 - Propagate container status exit code

Pull Request - State: closed - Opened by BMurri 7 months ago

#749 - Propagate container status exit code

Pull Request - State: closed - Opened by BMurri 7 months ago

#748 - TES task not failing when Docker container exits with non-zero exit code

Issue - State: closed - Opened by MattMcL4475 7 months ago
Labels: bug

#748 - TES task not failing when Docker container exits with non-zero exit code

Issue - State: closed - Opened by MattMcL4475 7 months ago
Labels: bug

#747 - Update libraries and remove deprecated unused libraries

Pull Request - State: closed - Opened by BMurri 7 months ago

#746 - Enable faster CI/CD

Pull Request - State: closed - Opened by BMurri 7 months ago

#746 - Enable faster CI/CD

Pull Request - State: closed - Opened by BMurri 7 months ago

#745 - Update version to 5.3.4

Pull Request - State: closed - Opened by BMurri 7 months ago

#745 - Update version to 5.3.4

Pull Request - State: closed - Opened by BMurri 7 months ago

#744 - Replace all use of ADAL with MSAL

Issue - State: closed - Opened by BMurri 7 months ago
Labels: external, TES Priority: P2, Code Quality Improvements, Deployability

#743 - Replace ADAL with MSAL, Replace methods lost in the transition to MSAL-affiliated libraries, Expire and retrieve Azure Batch Quota after 24 hours

Pull Request - State: closed - Opened by BMurri 7 months ago - 1 comment

#743 - Replace ADAL with MSAL, Replace methods lost in the transition to MSAL-affiliated libraries, Expire and retrieve Azure Batch Quota after 24 hours

Pull Request - State: closed - Opened by BMurri 7 months ago - 1 comment

#742 - Empty/whitespace shall have same effect as null in Tes.Input.URL / Content

Issue - State: closed - Opened by MattMcL4475 7 months ago - 2 comments
Labels: bug

#742 - Empty/whitespace shall have same effect as null in Tes.Input.URL / Content

Issue - State: closed - Opened by MattMcL4475 7 months ago - 2 comments
Labels: bug

#741 - Handle whitespace in task creation

Pull Request - State: closed - Opened by MattMcL4475 7 months ago - 1 comment

#740 - support specifying source for `allowed-vm-sizes`

Issue - State: closed - Opened by davidangb 8 months ago - 5 comments
Labels: enhancement, Robustness, Deployability

#739 - Attempt to reduce deployment failures due to ingress configuration delays

Pull Request - State: closed - Opened by BMurri 8 months ago

#738 - `helm` reliability improvements

Issue - State: closed - Opened by BMurri 8 months ago
Labels: bug, tobegroomed, Robustness, Deployability

#737 - Fix build break due to automatic GitHub merge

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: TES Priority: P1

#737 - Fix build break due to automatic GitHub merge

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: TES Priority: P1

#736 - Upgrades may leave the AAD pod identity chart in place if the cluster was temporarily busy

Issue - State: open - Opened by BMurri 8 months ago
Labels: bug, tobegroomed

#735 - Call the runner directly from the task command-line

Pull Request - State: closed - Opened by BMurri 8 months ago

#734 - Upload task outputs and metrics

Pull Request - State: closed - Opened by BMurri 8 months ago

#733 - [728-2-2] Enable setting Content-MD5 for TES outputs

Pull Request - State: closed - Opened by BMurri 8 months ago

#732 - Prevent previous docker `pull` from breaking the next task on the compute node

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug

#731 - Fix exception thrown in `AddProcessLogsIfAvailable`

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug

#731 - Fix exception thrown in `AddProcessLogsIfAvailable`

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug

#730 - Fix merge error preventing ejection of pools under quota pressure

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug, TES Priority: P1

#730 - Fix merge error preventing ejection of pools under quota pressure

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug, TES Priority: P1

#729 - [728-1] Runner calculates MD5 checksum for uploads.

Pull Request - State: closed - Opened by giventocode 8 months ago

#729 - [728-1] Runner calculates MD5 checksum for uploads.

Pull Request - State: closed - Opened by giventocode 8 months ago

#728 - Content-MD5 field is blank for Tes outputs

Issue - State: closed - Opened by jsaun 8 months ago
Labels: bug

#727 - Handle OperationNotAllowed during upgrade

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug

#727 - Handle OperationNotAllowed during upgrade

Pull Request - State: closed - Opened by BMurri 8 months ago
Labels: bug

#726 - Retry docker pulls when GCR returns "NotFound" (workaround for GCR error)

Pull Request - State: closed - Opened by BMurri 8 months ago

#726 - Retry docker pulls when GCR returns "NotFound" (workaround for GCR error)

Pull Request - State: closed - Opened by BMurri 8 months ago

#725 - Bump Azure.Identity from 1.11.2 to 1.11.4

Pull Request - State: closed - Opened by BMurri 8 months ago

#724 - Configure Task MaxWallClockTime separately from Pool lifetime

Pull Request - State: closed - Opened by BMurri 8 months ago

#724 - Configure Task MaxWallClockTime separately from Pool lifetime

Pull Request - State: closed - Opened by BMurri 8 months ago

#723 - Pool lifetime shall not affect task lifetime

Issue - State: closed - Opened by MattMcL4475 8 months ago
Labels: bug

#723 - Pool lifetime shall not affect task lifetime

Issue - State: closed - Opened by MattMcL4475 8 months ago
Labels: bug

#722 - Set AzureCloudName when deploying upgrades when not previously set

Pull Request - State: closed - Opened by BMurri 8 months ago - 2 comments

#721 - Upgrading TES deployment results in TES boot loop (failure to start)

Issue - State: closed - Opened by BMurri 8 months ago
Labels: bug, TES Priority: P1

#721 - Upgrading TES deployment results in TES boot loop (failure to start)

Issue - State: closed - Opened by BMurri 8 months ago
Labels: bug, TES Priority: P1

#720 - tes-runner should retry Docker image notfound

Issue - State: closed - Opened by MattMcL4475 8 months ago
Labels: Robustness, Scalability

#720 - tes-runner should retry Docker image notfound

Issue - State: closed - Opened by MattMcL4475 8 months ago
Labels: Robustness, Scalability

#719 - Address exit code 127 task failures after task's successful completion

Pull Request - State: closed - Opened by BMurri 9 months ago
Labels: bug

#719 - Address exit code 127 task failures after task's successful completion

Pull Request - State: closed - Opened by BMurri 9 months ago
Labels: bug

#718 - Add convenient initialization of TesClient with a TesCredentials

Pull Request - State: closed - Opened by BMurri 9 months ago
Labels: enhancement, Code Quality Improvements

#717 - Preview: GPU support

Pull Request - State: closed - Opened by BMurri 9 months ago - 3 comments

#716 - Add additional retries in runner (and refactor to use DI)

Pull Request - State: open - Opened by BMurri 9 months ago

#715 - WX-1594 Support for private ACR access in Terra

Pull Request - State: closed - Opened by jgainerdewar 9 months ago - 6 comments
Labels: enhancement

#715 - WX-1594 Support for private ACR access in Terra

Pull Request - State: closed - Opened by jgainerdewar 9 months ago - 6 comments
Labels: enhancement

#714 - Reduce risk of pools outlasting their SAS tokens

Pull Request - State: closed - Opened by BMurri 9 months ago

#713 - Pursue more efficient effective intra-task compute node cleanup

Issue - State: closed - Opened by BMurri 9 months ago
Labels: enhancement, Performance, Robustness, Scalability

#710 - Update k8s VmSize

Pull Request - State: open - Opened by BMurri 9 months ago
Labels: enhancement, Scalability

#707 - Add TES idempotency feature

Issue - State: closed - Opened by MattMcL4475 10 months ago
Labels: enhancement, TES Priority: P2, Performance, Scalability

#706 - Create faster integration test with common TES tasks

Issue - State: open - Opened by MattMcL4475 10 months ago
Labels: TES Priority: P2, Robustness

#692 - Use blobfuse2 for streamable TesInputs

Issue - State: closed - Opened by MattMcL4475 10 months ago
Labels: enhancement, Performance, Scalability

#685 - Bmurri/store unsupported backendparams repository

Pull Request - State: closed - Opened by BMurri 10 months ago - 1 comment

#684 - Store all backend parameters in TES database

Issue - State: closed - Opened by MattMcL4475 10 months ago
Labels: TES Priority: P3

#673 - Add support for TesInput directory

Pull Request - State: closed - Opened by MattMcL4475 11 months ago - 5 comments

#673 - Add support for TesInput directory

Pull Request - State: closed - Opened by MattMcL4475 11 months ago - 5 comments

#670 - Add compute node insights

Pull Request - State: open - Opened by BMurri 11 months ago

#667 - Pagination and tags filter improvements

Issue - State: closed - Opened by BMurri 11 months ago
Labels: enhancement, TES Priority: P2, Robustness, Code Quality Improvements, Usability, Spec Compliance

#664 - Fix default serialization

Pull Request - State: closed - Opened by vsmalladi 11 months ago - 9 comments

#664 - Fix default serialization

Pull Request - State: closed - Opened by vsmalladi 11 months ago - 9 comments

#663 - Create benchmarks for both individual and scale tests

Issue - State: open - Opened by MattMcL4475 11 months ago
Labels: TES Priority: P2

#662 - Create second storage account for TES internals

Issue - State: open - Opened by MattMcL4475 11 months ago
Labels: TES Priority: P2

#661 - Created Azure Government integration test

Issue - State: open - Opened by MattMcL4475 11 months ago
Labels: TES Priority: P2

#660 - Display test compliance tests results as a badge inside the main page on the repo

Issue - State: open - Opened by yuliadub 11 months ago
Labels: Documentation

#652 - Refactor DockerExecutor.cs

Issue - State: open - Opened by MattMcL4475 11 months ago
Labels: Code Quality Improvements

#630 - [#627 expired SAS tokens] Call the runner directly from the task command-line

Issue - State: closed - Opened by BMurri 12 months ago
Labels: enhancement, TES Priority: P2

#630 - [#627 expired SAS tokens] Call the runner directly from the task command-line

Issue - State: closed - Opened by BMurri 12 months ago
Labels: enhancement, TES Priority: P2

#622 - Update of start-up script to download tes_vm_perf.tgz and execute bootstrapper

Pull Request - State: open - Opened by jlester-msft 12 months ago - 3 comments
Labels: Needs Issue

#614 - Disable Pricing API calls via configuration

Issue - State: open - Opened by giventocode 12 months ago
Labels: TES Priority: P2

#613 - Unit test code that interfaces with the library connecting us with the docker engine daemon

Issue - State: open - Opened by BMurri 12 months ago
Labels: enhancement, TES Priority: P1

#612 - Added switch to suppress validation via batch account and cmd-line help

Pull Request - State: open - Opened by BMurri almost 1 year ago

#611 - Provision single vm nodepool only, switch to burstable sku

Pull Request - State: open - Opened by jsaun about 1 year ago

#597 - WIP: Add clouds and move away from ADAL

Pull Request - State: closed - Opened by BMurri about 1 year ago

#589 - Create example of running Nextflow workflow on TES

Issue - State: open - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: Documentation, enhancement, Usability

#586 - Store all backend_parameters

Issue - State: closed - Opened by MattMcL4475 about 1 year ago - 1 comment
Labels: enhancement

#585 - Store all backend parameters in TES database

Pull Request - State: closed - Opened by MattMcL4475 about 1 year ago

#582 - Add debug option that enables writing the raw request body to file system for debugging

Pull Request - State: open - Opened by MattMcL4475 about 1 year ago - 1 comment

#581 - Update GenerateBatchVmSkus's workflow because of (#562)

Pull Request - State: open - Opened by BMurri about 1 year ago

#574 - Batch pool can resize continuously if nodes never become usable

Issue - State: open - Opened by MattMcL4475 about 1 year ago
Labels: bug, TES Priority: P2

#573 - Address instances of pool "stalls" where the pool either ignores new targets or never evaluates to determine them.

Pull Request - State: closed - Opened by BMurri about 1 year ago

GitHub / microsoft/ga4gh-tes issues and pull requests