microsoft/ga4gh-tes issues and pull requests

#837 - Add in snakemake tes example.

Pull Request - State: closed - Opened by vsmalladi 5 days ago

#836 - Update AppArmor configuration

Pull Request - State: open - Opened by BMurri 5 days ago

#835 - Codesign all binaries included in GitHub releases during gated release jobs

Issue - State: open - Opened by BMurri 6 days ago
Labels: tobegroomed, Usability, Deployability

#834 - Use GITHUB_TOKEN to limit GitHub API rate-limiting

Pull Request - State: open - Opened by BMurri 7 days ago
Labels: Robustness, Deployability

#833 - Use default storage blob audience to work around bug in az cli and other fixes

Pull Request - State: closed - Opened by BMurri 9 days ago

#832 - St. Jude TES example

Pull Request - State: closed - Opened by vsmalladi 12 days ago

#831 - Create Rust Crankshaft example

Issue - State: open - Opened by vsmalladi 12 days ago
Labels: TES Priority: P2

#830 - Fix curl example.

Pull Request - State: closed - Opened by vsmalladi 13 days ago

#829 - Fix curl example

Issue - State: closed - Opened by vsmalladi 13 days ago
Labels: bug

#828 - Remove datasettestinputs from the list of external SAS containers

Pull Request - State: closed - Opened by BMurri 14 days ago

#827 - Replace storage account keys with user delegation keys

Pull Request - State: closed - Opened by BMurri 16 days ago

#826 - Add and use ACR to host server image(s)

Pull Request - State: closed - Opened by BMurri 19 days ago

#825 - Add and use ACR and stop loading images into MCR

Issue - State: closed - Opened by BMurri 19 days ago
Labels: enhancement, Performance, Robustness, Deployability

#824 - Create Rust TES example

Issue - State: closed - Opened by vsmalladi 22 days ago
Labels: TES Priority: P2

#823 - Debug aid

Issue - State: closed - Opened by BMurri 27 days ago
Labels: enhancement, TES Priority: P1, Robustness, Troubleshooting, Deployability

#822 - Add test node debugging aid

Pull Request - State: closed - Opened by BMurri about 1 month ago

#821 - Make cluster admin role assignment warn on failure

Pull Request - State: closed - Opened by BMurri 2 months ago

#820 - Add support for Windows tasks

Issue - State: open - Opened by BMurri 3 months ago - 1 comment
Labels: enhancement, TES Priority: P1

#819 - Update version to 5.5.1

Pull Request - State: closed - Opened by BMurri 3 months ago

#818 - Handle public blob storage containers in the TES server

Pull Request - State: closed - Opened by BMurri 3 months ago

#817 - Address flaky unit tests

Pull Request - State: closed - Opened by BMurri 3 months ago

#816 - Successfully don't add SAS token on blob storage URLs with no permissions

Pull Request - State: closed - Opened by BMurri 4 months ago - 2 comments

#816 - Successfully don't add SAS token on blob storage URLs with no permissions

Pull Request - State: closed - Opened by BMurri 4 months ago - 2 comments

#815 - Update version to 5.5.0

Pull Request - State: closed - Opened by BMurri 4 months ago

#814 - Fix code scanning alert no. 12: Log entries created from user input

Pull Request - State: closed - Opened by BMurri 4 months ago

#814 - Fix code scanning alert no. 12: Log entries created from user input

Pull Request - State: closed - Opened by BMurri 4 months ago

#813 - Address upgrade failure

Pull Request - State: closed - Opened by BMurri 4 months ago

#813 - Address upgrade failure

Pull Request - State: closed - Opened by BMurri 4 months ago

#812 - Update libraries

Pull Request - State: closed - Opened by BMurri 4 months ago

#812 - Update libraries

Pull Request - State: closed - Opened by BMurri 4 months ago

#811 - Add nuget package info to SDK project

Pull Request - State: open - Opened by MattMcL4475 4 months ago

#811 - Add nuget package info to SDK project

Pull Request - State: open - Opened by MattMcL4475 4 months ago

#810 - Update SDK example readme

Pull Request - State: closed - Opened by MattMcL4475 4 months ago

#810 - Update SDK example readme

Pull Request - State: closed - Opened by MattMcL4475 4 months ago

#809 - Update SDK readme contents

Pull Request - State: closed - Opened by MattMcL4475 4 months ago

#809 - Update SDK readme contents

Pull Request - State: closed - Opened by MattMcL4475 4 months ago

#808 - Relocate SDK files and add readme

Pull Request - State: closed - Opened by MattMcL4475 4 months ago

#808 - Relocate SDK files and add readme

Pull Request - State: closed - Opened by MattMcL4475 4 months ago

#807 - Add bwa example.

Pull Request - State: closed - Opened by vsmalladi 4 months ago - 1 comment

#806 - Update libraries

Pull Request - State: closed - Opened by BMurri 4 months ago

#806 - Update libraries

Pull Request - State: closed - Opened by BMurri 4 months ago

#805 - Dependabot updates

Pull Request - State: closed - Opened by BMurri 4 months ago

#805 - Dependabot updates

Pull Request - State: closed - Opened by BMurri 4 months ago

#804 - Dependabot updates

Pull Request - State: closed - Opened by BMurri 4 months ago
Labels: external

#804 - Dependabot updates

Pull Request - State: closed - Opened by BMurri 4 months ago
Labels: external

#803 - Fix bad merge

Pull Request - State: closed - Opened by BMurri 4 months ago

#802 - Create cwl-tes example

Issue - State: open - Opened by vsmalladi 5 months ago
Labels: TES Priority: P2

#801 - Create Snakemake TES example

Issue - State: closed - Opened by vsmalladi 5 months ago
Labels: TES Priority: P2

#800 - Add standard I/O streaming on the executor container

Pull Request - State: closed - Opened by BMurri 5 months ago

#799 - Fix docker image check for image cleanup

Pull Request - State: closed - Opened by BMurri 5 months ago

#798 - [797] Adds Azure Gov to the list of valid suffixes for ACR authentication.

Pull Request - State: closed - Opened by giventocode 5 months ago

#797 - ACR authentication fails when running on Azure Gov

Issue - State: closed - Opened by giventocode 5 months ago
Labels: bug, TES Priority: P1, Robustness, Usability, Size: small

#796 - Adding example of running tes tasks using different methods

Pull Request - State: closed - Opened by vsmalladi 5 months ago - 1 comment

#795 - Ability to specify AKS cluster name on deployment

Issue - State: open - Opened by MattMcL4475 5 months ago

#794 - Create example TES scripts

Issue - State: closed - Opened by vsmalladi 5 months ago
Labels: Documentation, TES Priority: P2

#793 - Executor stdout and stderr should be in their own files

Issue - State: closed - Opened by MattMcL4475 5 months ago - 1 comment
Labels: enhancement, TES Priority: P2

#792 - stdout.txt contains errors - should they be suppressed?

Issue - State: closed - Opened by MattMcL4475 5 months ago
Labels: bug, TES Priority: P1

#791 - Add TES SDK examples

Pull Request - State: closed - Opened by MattMcL4475 5 months ago

#790 - Implement multiple executors

Pull Request - State: open - Opened by BMurri 5 months ago

#789 - Update version to 5.4.5

Pull Request - State: closed - Opened by BMurri 5 months ago

#788 - Defer determination of tes task input types

Pull Request - State: closed - Opened by BMurri 5 months ago

#787 - Controller is overly aggressive in validating TesInputs

Issue - State: closed - Opened by BMurri 5 months ago
Labels: bug

#786 - Fix failure to remove batch pools when not running in Terra

Pull Request - State: closed - Opened by BMurri 5 months ago

#785 - Azure Batch Pools are not removed

Issue - State: closed - Opened by BMurri 5 months ago
Labels: bug

#784 - MCR's docker mirror for ubuntu does not include "latest"

Pull Request - State: closed - Opened by BMurri 5 months ago

#783 - Enable configuration of docker images used during deployment

Pull Request - State: closed - Opened by BMurri 5 months ago

#782 - Add Nextflow integration test to deployer

Pull Request - State: closed - Opened by MattMcL4475 5 months ago

#781 - Mark obsolete batch pools upon startup as not available for new tasks

Pull Request - State: closed - Opened by BMurri 5 months ago

#780 - Remove obsolete batch pools

Issue - State: closed - Opened by BMurri 5 months ago

#779 - Retry PostgreSQL server creation for InternalServerError

Pull Request - State: closed - Opened by BMurri 5 months ago

#778 - Feature: Attach specified data disk size to compute node

Pull Request - State: closed - Opened by BMurri 6 months ago

#777 - Fix failure to add service delegation to existing virtual network subnet

Pull Request - State: closed - Opened by BMurri 6 months ago

#776 - Expire (and recache) sku prices periodically

Pull Request - State: closed - Opened by BMurri 6 months ago

#775 - Update version to 5.4.3

Pull Request - State: closed - Opened by BMurri 6 months ago

#774 - Reenable ability to deploy with private networking

Pull Request - State: closed - Opened by BMurri 6 months ago

#773 - Add parent task ID to execute entire compute graph

Pull Request - State: open - Opened by MattMcL4475 6 months ago - 1 comment

#772 - Deployer: Check for role definition before adding it

Pull Request - State: closed - Opened by BMurri 6 months ago

#771 - Fix build version metadata generation

Pull Request - State: closed - Opened by BMurri 6 months ago

#770 - Update version to 5.4.2

Pull Request - State: closed - Opened by BMurri 6 months ago

#769 - Improved efficiency and reliability of DRS URI support

Pull Request - State: closed - Opened by BMurri 6 months ago

#768 - WX-1705 DRS Compact ID URIs need to have case insensitivity in the `prefix` portion of the URI

Issue - State: closed - Opened by BMurri 6 months ago
Labels: enhancement, Robustness