Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microsoft/Graphormer issues and pull requests

#202 - DiG protein explanation

Issue - State: open - Opened by bio-rat 2 months ago - 1 comment

#195 - About Visualization

Issue - State: open - Opened by Angenb 6 months ago - 1 comment

#184 - Feature representations for new Proteins in DiG

Issue - State: open - Opened by sai-advaith 7 months ago - 12 comments

#183 - Lack of diversity in the 1ake example prediction by DiG

Issue - State: open - Opened by PKUfjh 7 months ago - 9 comments

#174 - no setup.py and --user-feature param

Issue - State: open - Opened by it-can-bee about 1 year ago - 2 comments

#100 - No response after running the example scripts

Issue - State: closed - Opened by skye95git over 2 years ago - 15 comments

#99 - Example script hanging without any output or any error hint.

Issue - State: closed - Opened by seonwoo-min over 2 years ago - 8 comments

#98 - Why degree centrality encoding helps?

Issue - State: closed - Opened by chaoyan1037 over 2 years ago - 2 comments

#97 - About the results on ogbp-pcba in the process of finetune

Issue - State: open - Opened by zhangdan0602 over 2 years ago - 3 comments

#96 - Add Pre-LayerNorm and fix MolHIV script

Pull Request - State: closed - Opened by shiyu1994 over 2 years ago

#95 - Master

Pull Request - State: closed - Opened by MinhZou over 2 years ago

#94 - Total Updates in hiv_pre.sh

Issue - State: closed - Opened by adamoyoung over 2 years ago - 1 comment

#93 - A question about multi-hop and attention in version 1.0

Issue - State: closed - Opened by YAndrewL over 2 years ago

#92 - the evaluation on the PCBA dataset seems wrong

Issue - State: closed - Opened by Noisyntrain over 2 years ago - 4 comments

#91 - Replace RBF with GBF

Pull Request - State: closed - Opened by shiyu1994 over 2 years ago

#90 - About the resullt in ogbg-molhiv

Issue - State: open - Opened by dongZheX over 2 years ago - 12 comments

#89 - What are the main differences between Graphormer v1.0 and v2.0?

Issue - State: closed - Opened by seonwoo-min over 2 years ago - 1 comment

#88 - Question about graphormer version 1

Issue - State: open - Opened by Sangyoon-Bae almost 3 years ago - 1 comment

#87 - Padding in case of different number of nodes in batch

Issue - State: closed - Opened by ChantalMP almost 3 years ago - 4 comments

#86 - Hi, can your work be migrated to an undirected graph？

Issue - State: open - Opened by duzhenjiang113 almost 3 years ago - 1 comment

#85 - How to evaluate for dataset zinc?

Issue - State: open - Opened by dongZheX almost 3 years ago - 9 comments

#84 - Inputs for evaluate.py

Issue - State: open - Opened by gihanpanapitiya almost 3 years ago - 3 comments

#83 - Fix Graphormer Large Architecture

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#82 - [Feature request] Supports Sparse Graph Representation

Issue - State: open - Opened by zhengsx almost 3 years ago
Labels: enhancement

#81 - Remove optimizer history from pretrained model checkpoints

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#79 - Add OC20 IS2RE pretrain checkpoint

Pull Request - State: closed - Opened by YouJiacheng almost 3 years ago

#78 - PERF: faster path and edge_input generation algos

Pull Request - State: open - Opened by GYHHAHA almost 3 years ago - 1 comment
Labels: enhancement

#77 - Could upgrade and support torch-geometric 2.0 ?

Issue - State: open - Opened by zsz00 almost 3 years ago - 4 comments

#76 - Fix seed and split of customized datasets

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#75 - Can Graphormer be modified to accommodate node classification and link prediction problems?

Issue - State: open - Opened by zsz00 almost 3 years ago - 3 comments
Labels: enhancement

#74 - [Feature Request] Pre-trained Graphormer-large v2.0 on PCQM4M

Issue - State: open - Opened by zhengsx almost 3 years ago
Labels: enhancement

#73 - [Feature Request] Pre-trained Graphormer v2.0 model on OC20

Issue - State: closed - Opened by zhengsx almost 3 years ago
Labels: enhancement

#72 - [Feature Request] Package Graphormer code for PyPI

Issue - State: open - Opened by zhengsx almost 3 years ago
Labels: enhancement

#71 - [Feature Request] Molecule Feature Extraction by RDKit

Issue - State: open - Opened by zhengsx almost 3 years ago
Labels: enhancement

#70 - [Feature Request] Pre-trained Graphormer v2.0 model for OGBG-MolPCBA

Issue - State: open - Opened by zhengsx almost 3 years ago - 1 comment
Labels: enhancement

#69 - [Feature Request] High Efficient Shortest Path Implementation

Issue - State: open - Opened by zhengsx almost 3 years ago
Labels: enhancement

#68 - Recover customized dataset

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#67 - Add epoch shuffle option

Pull Request - State: closed - Opened by volltin almost 3 years ago

#66 - How to use custom datasets?

Issue - State: closed - Opened by Magicat128 almost 3 years ago - 3 comments
Labels: bug

#65 - Customizing number of epochs for training.

Issue - State: open - Opened by aahad5555 almost 3 years ago - 3 comments

#64 - RuntimeError: CUDA error: out of memory

Issue - State: closed - Opened by huahuaai almost 3 years ago - 4 comments

#63 - Feature Requests & Voting Hub

Issue - State: open - Opened by zhengsx almost 3 years ago
Labels: enhancement, help wanted

#62 - Fix shebang

Pull Request - State: closed - Opened by volltin almost 3 years ago - 1 comment

#61 - Update Parameters.rst for tasks and criterions

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#60 - How to evaluate the model with V.2?

Issue - State: open - Opened by AmeenAli almost 3 years ago - 5 comments

#59 - Revert "change doc logo"

Pull Request - State: closed - Opened by zhengsx almost 3 years ago

#58 - change doc logo

Pull Request - State: closed - Opened by zhengsx almost 3 years ago

#57 - Fix evaluation script

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#56 - Revert "Update Documentation Version to 2.0"

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#55 - Update Documentation Version to 2.0

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#54 - Fix Datasets.rst

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#53 - Rename .readthedocs.yml to .readthedocs.yaml

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#52 - Possible typo in the IS2RE processing file

Issue - State: closed - Opened by KruskalLin almost 3 years ago - 1 comment

#51 - Graphormer 2.0

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago - 1 comment

#50 - Graphormer 2.0

Pull Request - State: closed - Opened by shiyu1994 almost 3 years ago

#49 - merge main to v1.0 for the preparation of v2.0 release

Pull Request - State: closed - Opened by zhengsx almost 3 years ago

#48 - bugs in model.py line 144.

Issue - State: closed - Opened by usccolumbia almost 3 years ago - 2 comments

#46 - Update README.md

Pull Request - State: closed - Opened by zhengsx almost 3 years ago

#45 - algos AttributeError

Issue - State: closed - Opened by Amoy-Ou almost 3 years ago - 3 comments

#44 - Performance of Graphormer on traditional GNN benchmarks

Issue - State: closed - Opened by CurryTang almost 3 years ago - 1 comment

#43 - unable to import PygPCQN4MDataset

Issue - State: open - Opened by aahad5555 almost 3 years ago - 10 comments

#42 - problem when using algos.pyx

Issue - State: closed - Opened by jamesYu365 almost 3 years ago - 3 comments

#41 - The weight of embedding padding_idx=0 is not zero

Issue - State: closed - Opened by lkfo415579 almost 3 years ago - 5 comments

#40 - Changing entry.py for MisconfigurationException error

Issue - State: closed - Opened by Sangyoon-Bae almost 3 years ago - 7 comments

#39 - train from scratch on molecule datasets

Issue - State: open - Opened by hehuanma almost 3 years ago - 4 comments
Labels: good first issue

#38 - How can I do graph regression with graphormer?

Issue - State: closed - Opened by Sangyoon-Bae almost 3 years ago - 6 comments

#37 - Using the code for the new dataset that we made.

Issue - State: closed - Opened by gunahn almost 3 years ago - 2 comments

#36 - I don't know the effect of adding offset to the x feature in datapreprocess

Issue - State: closed - Opened by huahuaai almost 3 years ago - 4 comments

#35 - Cannot Reproduce Result of ZINC

Issue - State: closed - Opened by b05901024 about 3 years ago - 6 comments

#34 - question about code

Issue - State: closed - Opened by huigoing about 3 years ago - 4 comments

#33 - Typo

Issue - State: closed - Opened by MattMcPartlon about 3 years ago - 2 comments

#32 - Training Graphormer-Small on dataset PCQM4M and Understanding of Edge Encoder

Issue - State: closed - Opened by meloncolie about 3 years ago - 2 comments

#31 - Edge Understanding of Graphormer

Issue - State: closed - Opened by egeozsoy about 3 years ago - 2 comments

#30 - Report errors with validation dataloader

Issue - State: closed - Opened by zaixizhang about 3 years ago - 2 comments

#29 - A question about the file model.py

Issue - State: closed - Opened by linjc16 about 3 years ago - 2 comments

#28 - Feature offset

Issue - State: closed - Opened by linjc16 about 3 years ago - 3 comments

#27 - Report errors from pytorch_lightning

Issue - State: closed - Opened by zaixizhang about 3 years ago - 2 comments

#26 - How can i add a new dataset?

Issue - State: closed - Opened by AmeenAli about 3 years ago - 2 comments

#25 - PreTrained Models

Issue - State: closed - Opened by AmeenAli about 3 years ago - 6 comments

#24 - Update README.md

Pull Request - State: closed - Opened by zhengsx about 3 years ago

#23 - Evidential deep learning and other feature requests

Issue - State: open - Opened by schinto about 3 years ago
Labels: enhancement

#22 - About reproducing PCBA result

Issue - State: closed - Opened by Noisyntrain about 3 years ago - 10 comments

#21 - Update README.md

Pull Request - State: closed - Opened by zhengsx over 3 years ago

#20 - Unable to reproduce results

Issue - State: closed - Opened by peihaowang over 3 years ago - 4 comments

#19 - a question about Centrality Encoding

Issue - State: closed - Opened by NO1excavator over 3 years ago - 2 comments

#18 - a question about code

Issue - State: closed - Opened by CAODH over 3 years ago - 4 comments

#17 - how to speed up one epoch

Issue - State: closed - Opened by linzhenyuyuchen over 3 years ago - 2 comments

#16 - Results on ogbg-mol* without pretraining

Issue - State: closed - Opened by mengliu1998 over 3 years ago - 2 comments

#15 - fix typo

Pull Request - State: closed - Opened by zhengsx over 3 years ago

#14 - fix typo

Pull Request - State: closed - Opened by zhengsx over 3 years ago

#13 - Update README.md

Pull Request - State: closed - Opened by zhengsx over 3 years ago

#12 - Node classification

Issue - State: closed - Opened by steelman97 over 3 years ago - 1 comment

#11 - V1.0

Pull Request - State: closed - Opened by zhengsx over 3 years ago

#10 - Reproduce Validate MAE

Issue - State: closed - Opened by alirezamshi-zz over 3 years ago - 5 comments

#9 - fix a typo, two in_degree mis-assigned to out_degree

Pull Request - State: closed - Opened by JiechengZhao over 3 years ago

#8 - Could you please share more code about model?

Issue - State: closed - Opened by Young1993 over 3 years ago