Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microbiomedata/sheets_and_friends issues and pull requests

#76 - `induced_slot()` method from linkml library adding `alias` to slot

Issue - State: open - Opened by sujaypatil96 almost 3 years ago - 1 comment
Labels: bug

#75 - `glom()` adding unnecessary `alias` to `slot_usage`

Issue - State: closed - Opened by sujaypatil96 almost 3 years ago - 1 comment
Labels: bug

#74 - biotic_relationship and rel_to_oxygen no longer recommended?

Issue - State: closed - Opened by turbomam almost 3 years ago - 4 comments

#73 - alias not permitted in slot_usage slot #72

Pull Request - State: closed - Opened by turbomam almost 3 years ago

#72 - alias not permitted in slot_usage slot

Issue - State: open - Opened by turbomam almost 3 years ago

#71 - Add additional target which `bin/robot.jar` depends on

Pull Request - State: closed - Opened by sujaypatil96 almost 3 years ago
Labels: bug

#70 - decision about section & column ordering semantics

Issue - State: closed - Opened by turbomam almost 3 years ago - 4 comments

#69 - no longer MIxS (modified)?

Issue - State: closed - Opened by turbomam almost 3 years ago - 7 comments

#68 - geographical terms/"is it modified?" parent issue

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#67 - "geographic location (country and/or sea,region)" no longer checks formatting

Issue - State: closed - Opened by pvangay almost 3 years ago - 3 comments

#66 - DNA Absorbance 260/280 should not be required

Issue - State: closed - Opened by pvangay almost 3 years ago
Labels: bug, high-priority

#65 - GOLD path terms should be required

Issue - State: closed - Opened by pvangay almost 3 years ago - 2 comments
Labels: bug, required for GSP

#64 - EnvO terms should be listed together

Issue - State: closed - Opened by pvangay almost 3 years ago - 1 comment
Labels: bug, required for GSP

#63 - Update main.js

Pull Request - State: closed - Opened by subdavis almost 3 years ago

#62 - DataHarmonizer interface fixes

Pull Request - State: closed - Opened by subdavis almost 3 years ago

#61 - Google Sheets reads per user per minute exceeded?!

Issue - State: closed - Opened by turbomam almost 3 years ago - 5 comments

#60 - Could we drop the parenthetical portion of the cur_land_use permissible values?

Issue - State: closed - Opened by turbomam almost 3 years ago - 17 comments

#59 - SNTC and MIxS disagree on the permissible values for biotic_relationship

Issue - State: open - Opened by turbomam almost 3 years ago - 2 comments

#57 - Report disposition, don't assert it

Issue - State: open - Opened by turbomam almost 3 years ago - 2 comments

#56 - Infer section names, don't assert them

Issue - State: open - Opened by turbomam almost 3 years ago

#55 - Act on categorical_subsection values from modifications_long?

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#54 - will need to reorder columns in new sections

Issue - State: closed - Opened by turbomam almost 3 years ago

#53 - may have deleted some Sample ID section assignments

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#52 - remove core field, etc. from modifications_long tab

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#51 - depth required?

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#50 - Document overwriting a previous DH cell entry

Issue - State: open - Opened by turbomam almost 3 years ago

#49 - nmdc-dh-sheets sharing

Issue - State: closed - Opened by turbomam almost 3 years ago

#48 - Decide if/when to switch to this repo, as opposed to https://github.com/microbiomedata/DataHarmonizer

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment
Labels: question, high-priority

#47 - testing!

Issue - State: open - Opened by turbomam almost 3 years ago

#46 - makefile improvements

Issue - State: closed - Opened by turbomam almost 3 years ago - 3 comments

#45 - continue adding system dependencies to readme

Issue - State: open - Opened by turbomam almost 3 years ago

#44 - do something with categorical_subsection annotations, or delete them

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#43 - delete security blanket annotations after consensus reached on others

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#42 - standardize multiple examples on one slot

Issue - State: closed - Opened by turbomam almost 3 years ago - 9 comments

#41 - import DH as a submodule

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#39 - better lat_lon validation

Issue - State: closed - Opened by turbomam almost 3 years ago

#38 - does pH need a string serialization?

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#37 - string serialization overrides don't beat ranges

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#36 - don't bother asserting enum string serialization?

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#35 - temporal variations

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#34 - sample type enum validation

Issue - State: closed - Opened by turbomam almost 3 years ago

#33 - depth validation

Issue - State: closed - Opened by turbomam almost 3 years ago

#32 - column ordering

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#31 - examples from new_terms tab failing in do_shuttle

Issue - State: closed - Opened by turbomam almost 3 years ago - 3 comments

#30 - PVs with no enum name in data.tsv

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#28 - some slot_usage updates don't work?

Issue - State: closed - Opened by turbomam about 3 years ago

#27 - add examples handling to sheets_and_friends/mod_by_path.py

Issue - State: closed - Opened by turbomam about 3 years ago - 2 comments

#26 - now create create DH interface via data.tsv

Issue - State: closed - Opened by turbomam about 3 years ago - 4 comments
Labels: DH template generation

#25 - temporarily enter static quantity value definition into nmdc-dh-sheets

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#24 - use same section/column element names as microbiomedata/DataHarmonizer

Issue - State: closed - Opened by turbomam about 3 years ago - 2 comments
Labels: sections and orders

#23 - gen owl: PV urls need urlencoding?

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#22 - automatically retrieve dependent classes, enums, etc. in range of imported slots

Issue - State: closed - Opened by turbomam about 3 years ago - 2 comments

#20 - WARNING:root:Stripping value

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#19 - WARNING:root:Stripping value

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#18 - WARNING:root:from_schema not populated

Issue - State: open - Opened by turbomam about 3 years ago

#17 - Unrecognized prefix: MIXS

Issue - State: open - Opened by turbomam about 3 years ago

#16 - Overlapping subset and class names: EMSL, Sample ID

Issue - State: open - Opened by turbomam about 3 years ago - 2 comments

#15 - WARNING:PythonGenerator:No namespace defined for URI

Issue - State: open - Opened by turbomam about 3 years ago

#14 - ERROR:root:No PK for quantity_value

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#13 - ERROR:root:Multiple slots with URI

Issue - State: open - Opened by turbomam about 3 years ago

#12 - skipping yaml generation

Issue - State: closed - Opened by turbomam about 3 years ago - 2 comments

#11 - skipping shacl generation

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#10 - shuttle not shuffle

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#9 - slot rank instead of DH column order?

Issue - State: closed - Opened by turbomam about 3 years ago
Labels: sections and orders

#8 - try structured pattern rules

Issue - State: open - Opened by turbomam about 3 years ago - 1 comment

#7 - Try cidgoh's linkml-datastructure branch

Issue - State: closed - Opened by turbomam about 3 years ago - 3 comments
Labels: DH template generation

#6 - work on enums

Issue - State: open - Opened by turbomam about 3 years ago - 1 comment

#5 - implicit modifications from mixs_packages_x_slots

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment

#4 - excessive cogs fetching in Makefile

Issue - State: closed - Opened by turbomam about 3 years ago - 2 comments

#2 - Subsets may replace need for sections

Issue - State: closed - Opened by turbomam about 3 years ago - 1 comment
Labels: sections and orders, high-priority

#1 - SetuptoolsDeprecationWarning: setup.py install is deprecated

Issue - State: closed - Opened by turbomam about 3 years ago - 3 comments
Labels: high-priority