Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microbiomedata/sheets_and_friends issues and pull requests

#180 - Allow nested target paths in replace_attribute action

Pull Request - State: closed - Opened by pkalita-lbl 9 months ago - 5 comments

#179 - Add PyPI publish workflow

Pull Request - State: closed - Opened by pkalita-lbl about 1 year ago

#178 - Enable adding types to destination schema when shuttling slots

Pull Request - State: closed - Opened by pkalita-lbl about 1 year ago

#177 - update pandas restriction in `pyproject.toml` to `>=1.3.4`

Issue - State: open - Opened by turbomam about 1 year ago

#176 - Iterate over sorted lists instead of directly on sets

Pull Request - State: closed - Opened by pkalita-lbl about 1 year ago

#175 - Enum order is not consistent between runs of `do_shuttle`

Issue - State: closed - Opened by pkalita-lbl about 1 year ago

#174 - Delete .idea directory

Pull Request - State: closed - Opened by turbomam almost 2 years ago - 1 comment

#171 - modifications_long tab in sheets_and_friends configuration sheet not being applied to multi-view DH

Issue - State: closed - Opened by mslarae13 about 2 years ago - 3 comments
Labels: DH Multi-View Updates

#170 - string serialization no longer appears on slot help pop up in submission portal

Issue - State: open - Opened by mslarae13 about 2 years ago - 2 comments
Labels: DH Multi-View Updates

#167 - make a branch before merging Patricks

Issue - State: open - Opened by turbomam about 2 years ago

#166 - Schema updates for multi-tab DataHarmonizer interface

Pull Request - State: closed - Opened by pkalita-lbl about 2 years ago - 1 comment

#165 - `gen-python` errors out on submission schema

Issue - State: closed - Opened by sujaypatil96 about 2 years ago - 1 comment

#164 - DO NOT MERGE minimal MIxS term subsetter

Pull Request - State: closed - Opened by turbomam about 2 years ago - 2 comments

#163 - mixs subsetter

Issue - State: open - Opened by turbomam about 2 years ago

#161 - import slots from nmdc-schema instead of GSC's mixs.yaml

Issue - State: open - Opened by turbomam about 2 years ago

#159 - dna_cont_well pattern isn't being enforced

Issue - State: open - Opened by turbomam about 2 years ago - 2 comments

#158 - check for two unique keys

Pull Request - State: closed - Opened by turbomam about 2 years ago - 1 comment

#157 - Updated source_mat_id on submission portal

Issue - State: closed - Opened by mslarae13 over 2 years ago - 4 comments

#155 - With dh submod

Pull Request - State: closed - Opened by turbomam over 2 years ago - 1 comment

#154 - Issue 151 pure js

Pull Request - State: closed - Opened by turbomam over 2 years ago - 1 comment

#153 - removed DH submodule

Pull Request - State: closed - Opened by turbomam over 2 years ago - 1 comment

#152 - figure out why do_shuttle is so slow

Issue - State: open - Opened by turbomam over 2 years ago

#150 - Update README.md

Pull Request - State: closed - Opened by turbomam over 2 years ago - 1 comment

#148 - Water content validation and structure

Issue - State: closed - Opened by mslarae13 over 2 years ago - 21 comments
Labels: Prod code release needed

#146 - Allow users to freeze "sample name" column

Issue - State: closed - Opened by pvangay over 2 years ago - 4 comments

#145 - Use a usage-minimizer if Chris has written one

Issue - State: open - Opened by turbomam over 2 years ago - 1 comment

#144 - Swap first two columns in our DataHarmonizer interfaces

Issue - State: closed - Opened by turbomam over 2 years ago - 10 comments

#143 - Update water content validation

Issue - State: closed - Opened by mslarae13 over 2 years ago - 10 comments
Labels: invalid, interim fix

#142 - Update DH

Pull Request - State: closed - Opened by subdavis over 2 years ago - 2 comments

#139 - Typo in geographic location (latitude and longitude) pattern hint

Issue - State: closed - Opened by pvangay over 2 years ago - 11 comments

#138 - LinkML/MIxS/DataHarmonizer talking points

Issue - State: open - Opened by turbomam over 2 years ago

#137 - Rename or reconstitute "Sample ID" section

Issue - State: closed - Opened by turbomam over 2 years ago - 11 comments

#135 - Namespaces:mixs namespace is already mapped

Issue - State: open - Opened by turbomam over 2 years ago

#133 - Re-visit the ENVO drop downs for the soil package.

Issue - State: closed - Opened by ssarrafan over 2 years ago - 4 comments

#132 - Use dropdown cell type for fields with enum ranges

Issue - State: open - Opened by pkalita-lbl over 2 years ago

#131 - do_shuttle is by far the slowest step

Issue - State: closed - Opened by turbomam over 2 years ago - 1 comment

#129 - building on MacOS but not Ubuntu?

Issue - State: open - Opened by turbomam over 2 years ago

#128 - unrecognized range (unit) from poetry run gen-project

Issue - State: open - Opened by turbomam over 2 years ago - 4 comments

#127 - Conditional GOLD Ecosystem dropdowns

Pull Request - State: closed - Opened by pkalita-lbl over 2 years ago - 2 comments

#126 - bioscales content in issue-100 branch

Pull Request - State: closed - Opened by turbomam over 2 years ago - 3 comments

#125 - bioscales template dev cont.

Pull Request - State: closed - Opened by turbomam over 2 years ago - 2 comments

#124 - bioscales template development

Issue - State: open - Opened by turbomam over 2 years ago

#122 - Add case to message interface to handle showing reference window

Pull Request - State: closed - Opened by pkalita-lbl almost 3 years ago - 2 comments

#121 - Soil sample storage temperature help example fails on validation

Issue - State: closed - Opened by pvangay almost 3 years ago - 6 comments

#120 - Elevation should be required in the soil template

Issue - State: closed - Opened by pvangay almost 3 years ago - 6 comments

#119 - Soil Reference page no longer available

Issue - State: closed - Opened by pvangay almost 3 years ago - 4 comments

#118 - Enable EnvO triad dropdowns for soil package

Issue - State: closed - Opened by pvangay almost 3 years ago - 7 comments

#117 - Improved documentation about DH template construction and potential data loss

Issue - State: open - Opened by turbomam almost 3 years ago - 2 comments

#116 - deal with non-string serialization validations

Issue - State: closed - Opened by turbomam almost 3 years ago - 4 comments

#115 - add `pattern` property to generated NMDC linkml schema

Pull Request - State: closed - Opened by sujaypatil96 almost 3 years ago - 4 comments
Labels: Apr 2022

#114 - coordinate linkml-datastructure integration with Brandon

Issue - State: closed - Opened by turbomam almost 3 years ago - 5 comments

#113 - NMDC Apr release prioritization with Sujay and Patrick K

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment
Labels: Apr 2022

#112 - Feedback on new environmental packages in Data Harmonizer

Issue - State: closed - Opened by ssarrafan almost 3 years ago - 5 comments
Labels: April2022 Release

#111 - increase automation of linkml-datastructure/netlify operations

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#109 - correct ordering of light regimen and relationship to oxygen

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#108 - Ensure linkml-datastructure interfaces can be tied into the portal

Issue - State: closed - Opened by turbomam almost 3 years ago - 3 comments

#107 - curated EnvO terms for MIxS environment triad

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#106 - compare our double-click help screens

Issue - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#105 - functionality lost in linkml-datastructure

Issue - State: closed - Opened by turbomam almost 3 years ago - 3 comments

#104 - DataHarmonizer's linkml-datastructure branch doesn't use our validation rules

Issue - State: closed - Opened by turbomam almost 3 years ago - 5 comments

#101 - Ready for MERGE! netlify test with manually copied linkml-datastructure output

Pull Request - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#100 - try netlify for demo'ing NMDC DH built from cigdoh's linkml-datastructure branch

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#99 - reinstate template/soil_emsl_jgi_mg

Pull Request - State: closed - Opened by turbomam almost 3 years ago - 2 comments

#98 - Update .gitmodules

Pull Request - State: closed - Opened by subdavis almost 3 years ago - 1 comment

#97 - make a difference reporter for MIxS and NMDC DH classes

Issue - State: open - Opened by turbomam almost 3 years ago

#96 - make a sorter for the pipe seperated columns in Google Sheets

Issue - State: open - Opened by turbomam almost 3 years ago

#95 - How and when to use size_frac?

Issue - State: open - Opened by turbomam almost 3 years ago - 2 comments

#94 - Conversely, which environmental packages to include?

Issue - State: open - Opened by turbomam almost 3 years ago - 1 comment

#93 - several pipe sep sheets

Pull Request - State: closed - Opened by turbomam almost 3 years ago

#92 - allow pipe separated lists in GSheets input

Issue - State: open - Opened by turbomam almost 3 years ago

#90 - MIxS environments to exclude?

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#89 - MIxS sections to exclude?

Issue - State: open - Opened by turbomam almost 3 years ago - 2 comments

#88 - modify linkml2dataharmonizer transformer to support new nmdc schema semantics

Pull Request - State: closed - Opened by sujaypatil96 almost 3 years ago
Labels: DH template generation

#87 - increase Google Sheets API reads per minute per user quota etc

Issue - State: closed - Opened by turbomam almost 3 years ago - 9 comments

#86 - consolidate issues with microbiomedata/DataHarmonizer ?

Issue - State: open - Opened by turbomam almost 3 years ago

#85 - take wiki from NMDC dataharminzer repo

Issue - State: open - Opened by turbomam almost 3 years ago

#83 - nmdc-dh-sheets are going to get unmanageably long with too much copy and paste

Issue - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#82 - lists of ranks from schemasheets breaks gen-project

Issue - State: closed - Opened by turbomam almost 3 years ago

#81 - alias handling leaked out of main?

Pull Request - State: closed - Opened by turbomam almost 3 years ago

#80 - remember how to exhaust dependencies of imported slots

Pull Request - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#79 - add sediment DH interface(s)

Issue - State: closed - Opened by turbomam almost 3 years ago

#78 - sects and col nums helper

Pull Request - State: closed - Opened by turbomam almost 3 years ago - 1 comment

#77 - put the content for sheets_and_friends under version control?

Issue - State: open - Opened by turbomam almost 3 years ago