Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microbiomedata/nmdc_notebooks issues and pull requests

#101 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] about 2 months ago - 1 comment
Labels: report, automated issue

#100 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] about 2 months ago - 1 comment
Labels: report, automated issue

#99 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] about 2 months ago - 1 comment
Labels: report, automated issue

#98 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 2 months ago - 1 comment
Labels: report, automated issue

#97 - Modularize Python API wrapper functions

Issue - State: open - Opened by bmeluch 2 months ago

#92 - Translate omics data integration notebook into Python

Issue - State: open - Opened by bmeluch 2 months ago

#91 - Create notebook integrating 2 or more omics types (R)

Issue - State: open - Opened by bmeluch 2 months ago

#90 - Modularize R API wrapper functions

Issue - State: open - Opened by bmeluch 3 months ago

#88 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 3 months ago - 1 comment
Labels: report, automated issue

#87 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 3 months ago - 1 comment
Labels: report, automated issue

#86 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 3 months ago - 1 comment
Labels: report, automated issue

#85 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: report, automated issue

#84 - Updated CHANGELOG.MD for Release v2.0.0

Pull Request - State: closed - Opened by samobermiller 4 months ago

#83 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: report, automated issue

#82 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: report, automated issue

#81 - Update CHANGELOG.md

Pull Request - State: closed - Opened by brynnz22 4 months ago

#80 - Update API calls in NOM visualizations to reflect Berkeley schema

Pull Request - State: closed - Opened by samobermiller 4 months ago - 4 comments

#79 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: report, automated issue

#78 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: report, automated issue

#77 - Add NOM notebook links to main README

Pull Request - State: closed - Opened by bmeluch 4 months ago

#76 - Add new NOM notebook links to main README

Issue - State: closed - Opened by bmeluch 4 months ago

#75 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago - 1 comment
Labels: report, automated issue

#74 - Update PULL_REQUEST_TEMPLATE.md

Pull Request - State: closed - Opened by kheal 4 months ago - 1 comment

#73 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 4 months ago
Labels: report, automated issue

#72 - Remove gh workflow for checking links on Pull Requests

Pull Request - State: closed - Opened by kheal 5 months ago

#71 - [BUG] github workflow fails with "not valid yet links"

Issue - State: closed - Opened by kheal 5 months ago

#70 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 5 months ago - 1 comment
Labels: report, automated issue

#69 - Add R notebook exploring natural organic matter data

Pull Request - State: closed - Opened by bmeluch 5 months ago - 10 comments

#68 - Create python notebook to explore processed NOM data

Pull Request - State: closed - Opened by samobermiller 5 months ago - 26 comments

#66 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 5 months ago - 1 comment
Labels: report, automated issue

#65 - Refactor notebooks to be compliant with berkeley rollout

Pull Request - State: closed - Opened by kheal 6 months ago - 9 comments

#64 - Link Checker Report

Issue - State: closed - Opened by github-actions[bot] 6 months ago - 1 comment
Labels: report, automated issue

#63 - Add github workflow for checking notebooks

Pull Request - State: closed - Opened by kheal 7 months ago - 1 comment

#61 - Add github workflow to check that links in repo are good

Pull Request - State: closed - Opened by kheal 7 months ago - 1 comment

#60 - 59 githubaction urlchecker

Pull Request - State: closed - Opened by kheal 7 months ago - 1 comment

#56 - Move python API functions to separate py script and source

Issue - State: closed - Opened by samobermiller 7 months ago - 1 comment

#55 - [FEATURE REQUEST] Implement github actions

Issue - State: closed - Opened by kheal 7 months ago - 1 comment

#55 - [FEATURE REQUEST] Implement github actions

Issue - State: closed - Opened by kheal 7 months ago - 1 comment

#54 - Updates links in all readmes to point to new repo location

Pull Request - State: closed - Opened by kheal 7 months ago

#53 - Refactor R package management system and clean up R dependencies

Pull Request - State: closed - Opened by kheal 7 months ago

#51 - Add Git Versioning Docs

Pull Request - State: closed - Opened by brynnz22 7 months ago - 2 comments

#49 - Fix typo on CONTRIBUTING.md and add to PR template

Pull Request - State: closed - Opened by kheal 8 months ago

#48 - [BUG] Typo in CONTRIBUTING.md

Issue - State: closed - Opened by kheal 8 months ago

#47 - 27 dill required in multiple notebooks but not stated in dependencies

Pull Request - State: closed - Opened by samobermiller 8 months ago - 1 comment

#45 - Update README.md

Pull Request - State: closed - Opened by kheal 8 months ago

#44 - [BUG] Broken link to Contributing.md on the Readme

Issue - State: closed - Opened by kheal 8 months ago

#43 - Update repo-level documentation

Pull Request - State: closed - Opened by kheal 8 months ago - 1 comment

#42 - Add R notebook for taxonomy

Pull Request - State: closed - Opened by kheal 8 months ago - 2 comments

#39 - Add repo-level documentation

Issue - State: closed - Opened by kheal 9 months ago - 1 comment

#37 - Implement Github Versioning and Releases

Issue - State: closed - Opened by brynnz22 9 months ago - 1 comment

#35 - Add check to prevent key errors for lacking metadata in neon_soil_example

Pull Request - State: closed - Opened by kheal 9 months ago - 4 comments

#34 - Create R notebook to explore processed NOM data

Issue - State: closed - Opened by kheal 9 months ago

#32 - Create R-based notebook to explore taxonomy

Issue - State: closed - Opened by kheal 9 months ago - 2 comments
Labels: backlog

#31 - Add notebook using sparql-dataframe library in python

Issue - State: open - Opened by turbomam 10 months ago - 3 comments

#30 - pprint, defensiveness, pure matplotlib

Pull Request - State: open - Opened by turbomam 10 months ago - 1 comment

#29 - defensiveness, dill and pprint

Pull Request - State: closed - Opened by turbomam 10 months ago

#27 - `dill` required in multiple notebooks but not stated in dependencies

Issue - State: closed - Opened by turbomam 10 months ago - 1 comment
Labels: good first issue

#26 - statsmodels required for bioscales.ipynb

Issue - State: closed - Opened by turbomam 10 months ago

#25 - require statsmodel

Pull Request - State: closed - Opened by turbomam 10 months ago

#24 - Soil contig tax

Pull Request - State: closed - Opened by brynnz22 about 1 year ago - 6 comments

#23 - Convert all R notebooks to jupyter exclusively

Pull Request - State: closed - Opened by kheal about 1 year ago - 1 comment

#22 - Prepare and release Bio-Scales notebooks for exploration

Pull Request - State: closed - Opened by kheal about 1 year ago

#21 - Add bioscales python notebook

Pull Request - State: closed - Opened by brynnz22 about 1 year ago - 1 comment

#20 - Rename `.txt` file to `.txt.js` to enable syntax highlighting

Issue - State: closed - Opened by eecavanna about 1 year ago - 3 comments
Labels: documentation, enhancement, good first issue, x small

#19 - R example for bioscales, small mods on readmes

Pull Request - State: closed - Opened by kheal about 1 year ago

#18 - Add Readme for Bioscales

Issue - State: closed - Opened by brynnz22 about 1 year ago

#17 - Add R notebook for exploring bioscales metadata

Issue - State: closed - Opened by kheal about 1 year ago

#16 - Add Overview section at top of main Readme

Issue - State: closed - Opened by brynnz22 about 1 year ago

#15 - Bioscales notebook

Pull Request - State: closed - Opened by brynnz22 about 1 year ago

#14 - Neon new notebook py

Pull Request - State: closed - Opened by brynnz22 about 1 year ago

#13 - mods on rmd, concerning the R portion of #11

Pull Request - State: closed - Opened by kheal about 1 year ago

#12 - Removed binder links, update Rmd to just look at soil samples.

Pull Request - State: closed - Opened by kheal about 1 year ago

#11 - Pull out biosample type from NEON pH notebooks

Issue - State: closed - Opened by brynnz22 about 1 year ago - 1 comment

#10 - Added binder and google colab links for existing R and python notebooks

Pull Request - State: closed - Opened by kheal about 1 year ago

#8 - Add Notebook for Contig-Soil Taxonomy Question

Issue - State: closed - Opened by brynnz22 about 1 year ago - 1 comment

#7 - Add links for Google Colab for jupyter notebooks

Issue - State: closed - Opened by kheal about 1 year ago

#6 - Cull dependencies

Issue - State: closed - Opened by kheal about 1 year ago

#5 - Add binders

Issue - State: closed - Opened by kheal about 1 year ago

#4 - Readmes and R work

Pull Request - State: closed - Opened by kheal over 1 year ago - 1 comment

#3 - Add narrative about where to find the API documentation

Issue - State: closed - Opened by kheal over 1 year ago - 2 comments

#2 - Evn python

Pull Request - State: closed - Opened by brynnz22 over 1 year ago

#1 - Move folders

Pull Request - State: closed - Opened by brynnz22 over 1 year ago - 1 comment