Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microbiomedata/nmdc-edge issues and pull requests

#47 - Update issue templates

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#47 - Update issue templates

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#46 - automate periodic workflow tests

Issue - State: open - Opened by mflynn-lanl about 1 year ago - 1 comment

#46 - automate periodic workflow tests

Issue - State: open - Opened by mflynn-lanl about 1 year ago - 1 comment

#45 - Add batch mode

Issue - State: open - Opened by mflynn-lanl about 1 year ago

#45 - Add batch mode

Issue - State: open - Opened by mflynn-lanl about 1 year ago

#43 - Replace pipeline of shell commands with simpler Node command

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: enhancement, x small, cleanup :broom:

#43 - Replace pipeline of shell commands with simpler Node command

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: enhancement, x small, cleanup :broom:

#42 - sync metaAssembly WDL with NMDC

Issue - State: open - Opened by mflynn-lanl over 1 year ago - 2 comments

#42 - sync metaAssembly WDL with NMDC

Issue - State: open - Opened by mflynn-lanl over 1 year ago - 2 comments

#41 - 38 sync annotation nmdc

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#41 - 38 sync annotation nmdc

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#40 - update genomad version to 1.7.1 and db to v1.6

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#40 - update genomad version to 1.7.1 and db to v1.6

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#39 - Update genomad to 1.7.1

Issue - State: open - Opened by Michal-Babins over 1 year ago

#39 - Update genomad to 1.7.1

Issue - State: open - Opened by Michal-Babins over 1 year ago

#38 - sync-annotation-nmdc

Issue - State: open - Opened by mflynn-lanl over 1 year ago

#38 - sync-annotation-nmdc

Issue - State: open - Opened by mflynn-lanl over 1 year ago

#37 - sync-mags-nmdc

Issue - State: open - Opened by mflynn-lanl over 1 year ago - 2 comments

#37 - sync-mags-nmdc

Issue - State: open - Opened by mflynn-lanl over 1 year ago - 2 comments

#36 - Clean up client environment variables (and move one from client to server)

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago - 2 comments
Labels: bug, documentation, enhancement

#36 - Clean up client environment variables (and move one from client to server)

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago - 2 comments
Labels: bug, documentation, enhancement

#35 - Document some environment variables used by web client

Issue - State: closed - Opened by eecavanna over 1 year ago - 8 comments
Labels: documentation, x small

#35 - Document some environment variables used by web client

Issue - State: closed - Opened by eecavanna over 1 year ago - 8 comments
Labels: documentation, x small

#34 - Generate `.env` files independently of templates and `install.sh` script

Issue - State: closed - Opened by eecavanna over 1 year ago - 1 comment
Labels: decision needed

#34 - Generate `.env` files independently of templates and `install.sh` script

Issue - State: closed - Opened by eecavanna over 1 year ago - 1 comment
Labels: decision needed

#33 - bug fix

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#33 - bug fix

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#32 - file selector input validation issue

Issue - State: closed - Opened by yxu-lanl over 1 year ago
Labels: bug

#32 - file selector input validation issue

Issue - State: closed - Opened by yxu-lanl over 1 year ago
Labels: bug

#31 - create new repo for virusPlasmids

Issue - State: closed - Opened by mflynn-lanl over 1 year ago - 1 comment

#31 - create new repo for virusPlasmids

Issue - State: closed - Opened by mflynn-lanl over 1 year ago - 1 comment

#30 - remove social login

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#30 - remove social login

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#29 - Remove dependency on Facebook and Google login packages (npm)

Issue - State: closed - Opened by eecavanna over 1 year ago
Labels: x small

#28 - 27 fix metag pipeline annotation

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#28 - 27 fix metag pipeline annotation

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#27 - fix-metag-pipeline-annotation

Issue - State: closed - Opened by mflynn-lanl over 1 year ago

#27 - fix-metag-pipeline-annotation

Issue - State: closed - Opened by mflynn-lanl over 1 year ago

#26 - Update metaProteomics_inputs.tmpl

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#25 - substitute-nmdc-wdls

Issue - State: open - Opened by mflynn-lanl over 1 year ago

#25 - substitute-nmdc-wdls

Issue - State: open - Opened by mflynn-lanl over 1 year ago

#24 - 23 singularity refdata bind

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago - 1 comment

#23 - Singularity bind path the refdata is incorrect

Issue - State: open - Opened by mflynn-lanl over 1 year ago - 3 comments

#23 - Singularity bind path the refdata is incorrect

Issue - State: open - Opened by mflynn-lanl over 1 year ago - 3 comments

#22 - added google tag to index.html

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#22 - added google tag to index.html

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#21 - Add Google Analytics to nmdc-edge site

Issue - State: closed - Opened by mflynn-lanl over 1 year ago

#21 - Add Google Analytics to nmdc-edge site

Issue - State: closed - Opened by mflynn-lanl over 1 year ago

#20 - Web app depends upon Node.js v16, which is EOL (unsupported)

Issue - State: closed - Opened by eecavanna over 1 year ago - 6 comments
Labels: bug

#20 - Web app depends upon Node.js v16, which is EOL (unsupported)

Issue - State: closed - Opened by eecavanna over 1 year ago - 6 comments
Labels: bug

#19 - Fix issues impacting installation of web app client

Pull Request - State: closed - Opened by eecavanna over 1 year ago

#19 - Fix issues impacting installation of web app client

Pull Request - State: closed - Opened by eecavanna over 1 year ago

#18 - Get Cromwell running on Google Cloud Platform

Issue - State: closed - Opened by mflynn-lanl over 1 year ago - 1 comment

#18 - Get Cromwell running on Google Cloud Platform

Issue - State: closed - Opened by mflynn-lanl over 1 year ago - 1 comment

#17 - Containerize the web app

Pull Request - State: closed - Opened by eecavanna over 1 year ago - 2 comments
Labels: documentation, enhancement, x large, cleanup :broom:

#17 - Containerize the web app

Pull Request - State: closed - Opened by eecavanna over 1 year ago - 2 comments
Labels: documentation, enhancement, x large, cleanup :broom:

#15 - Web app client fails to build with Node.js v18

Issue - State: open - Opened by eecavanna over 1 year ago - 3 comments
Labels: bug

#15 - Web app client fails to build with Node.js v18

Issue - State: open - Opened by eecavanna over 1 year ago - 3 comments
Labels: bug

#14 - Repository does not include `package-lock.json` file for web app client

Issue - State: closed - Opened by eecavanna over 1 year ago - 1 comment
Labels: bug, documentation

#13 - Cannot install dependencies of web app client via `$ npm install`

Issue - State: closed - Opened by eecavanna over 1 year ago - 2 comments
Labels: bug, decision needed

#13 - Cannot install dependencies of web app client via `$ npm install`

Issue - State: closed - Opened by eecavanna over 1 year ago - 2 comments
Labels: bug, decision needed

#12 - Containerize the web app

Issue - State: closed - Opened by eecavanna over 1 year ago
Labels: enhancement, small

#12 - Containerize the web app

Issue - State: closed - Opened by eecavanna over 1 year ago
Labels: enhancement, small

#11 - Create a `README.md` file that contains an overview of the repository

Issue - State: closed - Opened by eecavanna over 1 year ago - 1 comment
Labels: documentation, good first issue, x small

#10 - Http input

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#10 - Http input

Pull Request - State: closed - Opened by yxu-lanl over 1 year ago

#9 - sync NMDC-EDGE with NMDC annotation and binning workflows

Issue - State: closed - Opened by aclum over 1 year ago - 23 comments

#9 - sync NMDC-EDGE with NMDC annotation and binning workflows

Issue - State: closed - Opened by aclum over 1 year ago - 23 comments

#8 - added mkdir for checkv

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#8 - added mkdir for checkv

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#7 - update to handle no virus proteins

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#6 - Add check after geNomad to make sure fasta file is not empty

Issue - State: open - Opened by Michal-Babins over 1 year ago - 1 comment
Labels: bug

#5 - Set up a meeting about Google cloud set up

Issue - State: closed - Opened by ssarrafan over 1 year ago

#4 - Dev

Pull Request - State: closed - Opened by mflynn-lanl over 1 year ago

#3 - SRA input capability

Issue - State: closed - Opened by jkelliher-github over 1 year ago - 1 comment
Labels: enhancement

#2 - Fix metaG finish task

Pull Request - State: closed - Opened by chienchi over 1 year ago

#1 - Cromwell retry and Could not localize some MAGs output files since they are already renamed in finish task

Issue - State: closed - Opened by chienchi over 1 year ago - 1 comment
Labels: bug, small