microbiomedata/nmdc-edge issues and pull requests

#100 - updated after testing env changes

Pull Request - State: closed - Opened by yxu-lanl 12 months ago - 2 comments

#100 - updated after testing env changes

Pull Request - State: closed - Opened by yxu-lanl 12 months ago - 2 comments

#99 - Comments contain recurring typo

Issue - State: closed - Opened by eecavanna 12 months ago - 1 comment
Labels: backlog, documentation, good first issue, x small

#99 - Comments contain recurring typo

Issue - State: closed - Opened by eecavanna 12 months ago - 1 comment
Labels: backlog, documentation, good first issue, x small

#98 - VirusesPlasmids move to wrong summary directory

Issue - State: open - Opened by mflynn-lanl 12 months ago

#98 - VirusesPlasmids move to wrong summary directory

Issue - State: open - Opened by mflynn-lanl 12 months ago

#97 - Display website message

Issue - State: closed - Opened by mflynn-lanl 12 months ago
Labels: enhancement

#97 - Display website message

Issue - State: closed - Opened by mflynn-lanl 12 months ago
Labels: enhancement

#96 - Implement new environment variables before deploying latest app

Issue - State: closed - Opened by eecavanna 12 months ago - 8 comments
Labels: backlog

#96 - Implement new environment variables before deploying latest app

Issue - State: closed - Opened by eecavanna 12 months ago - 8 comments
Labels: backlog

#95 - add support for virusPlasmid workflow to metagenome end-to-end

Pull Request - State: closed - Opened by Michal-Babins almost 1 year ago

#94 - Lock-down options for the Metagenomics pipeline

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 2 comments
Labels: bug

#94 - Lock-down options for the Metagenomics pipeline

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 2 comments
Labels: bug

#93 - Import `config` object before referencing it and fix environment variable name

Pull Request - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: bug, x small

#93 - Import `config` object before referencing it and fix environment variable name

Pull Request - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: bug, x small

#92 - license expired for run_cds_prediction

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 3 comments
Labels: bug

#92 - license expired for run_cds_prediction

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 3 comments
Labels: bug

#91 - Document the mapping from old environment variables to current ones

Issue - State: closed - Opened by eecavanna about 1 year ago - 6 comments
Labels: x small

#91 - Document the mapping from old environment variables to current ones

Issue - State: closed - Opened by eecavanna about 1 year ago - 6 comments
Labels: x small

#90 - Environment variable is not used anywhere (`WORKFLOW_WDL_IMPORTS`)

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small, cleanup :broom:

#90 - Environment variable is not used anywhere (`WORKFLOW_WDL_IMPORTS`)

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small, cleanup :broom:

#89 - Possible bug: `sendMail.js` uses username as `api_key` and password as `domain`

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: bug, question, x small

#89 - Possible bug: `sendMail.js` uses username as `api_key` and password as `domain`

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: bug, question, x small

#88 - Avoid embedded details about deployment environment into client build

Issue - State: closed - Opened by eecavanna about 1 year ago - 2 comments
Labels: cleanup :broom:

#88 - Avoid embedded details about deployment environment into client build

Issue - State: closed - Opened by eecavanna about 1 year ago - 2 comments
Labels: cleanup :broom:

#87 - Populate GitHub repository description

Issue - State: closed - Opened by eecavanna about 1 year ago - 2 comments
Labels: documentation, x small

#87 - Populate GitHub repository description

Issue - State: closed - Opened by eecavanna about 1 year ago - 2 comments
Labels: documentation, x small

#86 - Create a `README.md` file for the repository

Pull Request - State: closed - Opened by eecavanna about 1 year ago - 3 comments
Labels: documentation, enhancement, x small

#86 - Create a `README.md` file for the repository

Pull Request - State: closed - Opened by eecavanna about 1 year ago - 3 comments
Labels: documentation, enhancement, x small

#85 - Assign version numbers to NMDC EDGE releases/updates

Issue - State: closed - Opened by shreddd about 1 year ago - 3 comments
Labels: backlog, documentation, enhancement, beta-testing

#85 - Assign version numbers to NMDC EDGE releases/updates

Issue - State: closed - Opened by shreddd about 1 year ago - 3 comments
Labels: backlog, documentation, enhancement, beta-testing

#84 - sync ReadsQC with NMDC

Issue - State: open - Opened by mflynn-lanl about 1 year ago
Labels: enhancement

#84 - sync ReadsQC with NMDC

Issue - State: open - Opened by mflynn-lanl about 1 year ago
Labels: enhancement

#83 - sync NMDC ReadbasedAnalysis

Issue - State: open - Opened by mflynn-lanl about 1 year ago
Labels: enhancement

#83 - sync NMDC ReadbasedAnalysis

Issue - State: open - Opened by mflynn-lanl about 1 year ago
Labels: enhancement

#82 - Shut down GKE workloads before winter break

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small

#82 - Shut down GKE workloads before winter break

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small

#81 - Cannot install client dependencies without `--legacy-peer-deps` (Node v16 and Node v18)

Issue - State: open - Opened by eecavanna about 1 year ago - 1 comment
Labels: bug

#81 - Cannot install client dependencies without `--legacy-peer-deps` (Node v16 and Node v18)

Issue - State: open - Opened by eecavanna about 1 year ago - 1 comment
Labels: bug

#80 - Registration form does not submit and does not hide error messages (Node v18)

Issue - State: open - Opened by eecavanna about 1 year ago - 9 comments
Labels: bug

#80 - Registration form does not submit and does not hide error messages (Node v18)

Issue - State: open - Opened by eecavanna about 1 year ago - 9 comments
Labels: bug

#79 - changed path to metaMAGs_database to path in container for MAGs template

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#79 - changed path to metaMAGs_database to path in container for MAGs template

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#78 - SRA downloads are not available to other users

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 1 comment
Labels: bug

#78 - SRA downloads are not available to other users

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 1 comment
Labels: bug

#77 - Update workflow-failures.md

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#77 - Update workflow-failures.md

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#76 - 'My Projects' hidden columns for Node v18

Issue - State: closed - Opened by yxu-lanl about 1 year ago - 4 comments
Labels: bug

#76 - 'My Projects' hidden columns for Node v18

Issue - State: closed - Opened by yxu-lanl about 1 year ago - 4 comments
Labels: bug

#75 - Web app manifest says `LANL EDGE` instead of `NMDC EDGE`

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small

#75 - Web app manifest says `LANL EDGE` instead of `NMDC EDGE`

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small

#74 - Client env file templates have different `REACT_APP_FILEUPLOAD_ALLOWED_EXTENSIONS` lists (dev vs. prod)

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small

#74 - Client env file templates have different `REACT_APP_FILEUPLOAD_ALLOWED_EXTENSIONS` lists (dev vs. prod)

Issue - State: closed - Opened by eecavanna about 1 year ago - 1 comment
Labels: x small

#73 - Login button moves upward when user hovers over nearby elements

Issue - State: open - Opened by eecavanna about 1 year ago
Labels: bug, x small

#73 - Login button moves upward when user hovers over nearby elements

Issue - State: open - Opened by eecavanna about 1 year ago
Labels: bug, x small

#72 - React app takes 10-30 minutes to build (on arm64 builder, for amd64 target)

Issue - State: closed - Opened by eecavanna about 1 year ago - 2 comments

#72 - React app takes 10-30 minutes to build (on arm64 builder, for amd64 target)

Issue - State: closed - Opened by eecavanna about 1 year ago - 2 comments

#71 - MetaG - Genomad linkages

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: beta-testing

#71 - MetaG - Genomad linkages

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: beta-testing

#70 - Update table headers with better descriptors

Issue - State: open - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: beta-testing

#70 - Update table headers with better descriptors

Issue - State: open - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: beta-testing

#69 - Upload data in the workflow page

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: beta-testing

#69 - Upload data in the workflow page

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: beta-testing

#68 - Documentation and in-workflow help guidance

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: documentation, small, beta-testing

#67 - Implement bulk download of outputs

Issue - State: open - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: enhancement, large, beta-testing

#67 - Implement bulk download of outputs

Issue - State: open - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: enhancement, large, beta-testing

#66 - Implement new data visualizations

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 3 comments
Labels: enhancement, x large, beta-testing

#65 - Clarify "multiple files" feature

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: x small, beta-testing

#65 - Clarify "multiple files" feature

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: x small, beta-testing

#64 - Request for metabolomics workflow

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, beta-testing

#64 - Request for metabolomics workflow

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, beta-testing

#63 - Results navigation update

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, small, beta-testing

#63 - Results navigation update

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, small, beta-testing

#62 - Submitting multiple jobs - update redirect to my projects; batch submit

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, medium, beta-testing

#62 - Submitting multiple jobs - update redirect to my projects; batch submit

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, medium, beta-testing

#61 - Website text review

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: small, beta-testing

#61 - Website text review

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: small, beta-testing

#60 - Update interface header in "my projects" page

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: x small, beta-testing

#60 - Update interface header in "my projects" page

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: x small, beta-testing

#59 - Add verbose feedback for workflow status

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: enhancement, large, beta-testing

#58 - Remove email display in public project list

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: x small, beta-testing

#58 - Remove email display in public project list

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 1 comment
Labels: x small, beta-testing

#57 - Reorganize/relabel test data folder/files

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: small, beta-testing

#57 - Reorganize/relabel test data folder/files

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: small, beta-testing

#56 - Add more test data for all workflows

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: small, beta-testing

#56 - Add more test data for all workflows

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: small, beta-testing

#55 - Add reporting mechanism for project-specific issues

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: large, beta-testing

#54 - Genomad output table reformatting

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 3 comments
Labels: bug, small, beta-testing

#54 - Genomad output table reformatting

Issue - State: closed - Opened by ljohnson09 about 1 year ago - 3 comments
Labels: bug, small, beta-testing

#53 - Automated ticketing system and consistent bug reporting

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: bug, x large, beta-testing

#53 - Automated ticketing system and consistent bug reporting

Issue - State: open - Opened by ljohnson09 about 1 year ago
Labels: bug, x large, beta-testing

#52 - changed path to metaMAGs_database to path in container

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#52 - changed path to metaMAGs_database to path in container

Pull Request - State: closed - Opened by mflynn-lanl about 1 year ago

#51 - Readbased Analysis Centrifuge error

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 3 comments

#51 - Readbased Analysis Centrifuge error

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 3 comments

#50 - Viruses and Plasmids project output summary error

Issue - State: open - Opened by mflynn-lanl about 1 year ago

#50 - Viruses and Plasmids project output summary error

Issue - State: open - Opened by mflynn-lanl about 1 year ago

#49 - Metagenome Assembly spades failed

Issue - State: open - Opened by mflynn-lanl about 1 year ago - 6 comments
Labels: enhancement

#48 - Metagenome MAGs GTDBTK

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 1 comment

#48 - Metagenome MAGs GTDBTK

Issue - State: closed - Opened by mflynn-lanl about 1 year ago - 1 comment

GitHub / microbiomedata/nmdc-edge issues and pull requests