Ecosyste.ms: Issues

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GitHub / microbiomedata/nmdc-aggregator issues and pull requests

#30 - Update generate_metap_agg.py

Pull Request - State: closed - Opened by aclum 2 months ago

#27 - Refactor metaproteomics aggregation script

Pull Request - State: closed - Opened by kheal 3 months ago - 14 comments

#26 - Refactor metaP aggregation

Issue - State: closed - Opened by kheal 3 months ago - 1 comment

#25 - Modify metagenome_annotation_id to was_generated_by

Pull Request - State: closed - Opened by kheal 4 months ago - 2 comments

#23 - Berkeley: Merge branch `10-...` into `main`

Pull Request - State: closed - Opened by eecavanna 4 months ago

#21 - Automatically synchronize `VERSION` file with Release tag name

Pull Request - State: closed - Opened by eecavanna 4 months ago

#20 - Update GHA workflow to synchronize `VERSION` file with release tag

Issue - State: closed - Opened by eecavanna 4 months ago
Labels: enhancement

#19 - Update functional_agg to use workflow_execution_set

Pull Request - State: closed - Opened by mbthornton-lbl 4 months ago - 1 comment

#18 - DO NOT MERGE `berkeley` metaproteomics aggregation updates PR

Pull Request - State: closed - Opened by aclum 5 months ago

#16 - Document process of setting up local development environment

Pull Request - State: closed - Opened by eecavanna 5 months ago

#15 - Refine developer documentation in `README.md`

Issue - State: closed - Opened by eecavanna 6 months ago
Labels: documentation

#14 - generate aggregation results for COG and Pfam. Add tests

Pull Request - State: closed - Opened by chienchi 6 months ago

#13 - Update generate_metap_agg.py script to source ids from new slot

Issue - State: closed - Opened by kheal 6 months ago - 1 comment

#11 - update aggregation scripts to use API to submit instead of pymongo

Issue - State: open - Opened by aclum 6 months ago - 8 comments

#10 - `berkeley`: update generate_metap_agg.py

Issue - State: closed - Opened by aclum 7 months ago - 10 comments

#9 - `berkeley`: update generate_functional_agg.py

Issue - State: closed - Opened by aclum 7 months ago - 5 comments

#7 - Disable debug logs

Pull Request - State: closed - Opened by eecavanna 9 months ago

#6 - Unwrap rows from `kegg_term_counts` dictionary

Pull Request - State: closed - Opened by eecavanna 9 months ago - 1 comment

#5 - Print the `rows` value to help with debugging

Pull Request - State: closed - Opened by eecavanna 9 months ago

#3 - Add log statements to help with debugging

Pull Request - State: closed - Opened by eecavanna 9 months ago

#2 - Add logging to assist in debugging

Issue - State: closed - Opened by eecavanna 9 months ago - 1 comment

#1 - Document deployment process

Issue - State: closed - Opened by eecavanna 9 months ago - 1 comment
Labels: documentation, x small