Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microbiomedata/mg_annotation issues and pull requests

#42 - Enable "Edit on GitHub" link by defining `:github_url:` in `index.rst`

Pull Request - State: closed - Opened by eecavanna about 2 months ago

#40 - Update documentation for outputs

Pull Request - State: open - Opened by kaijli 2 months ago

#40 - Update documentation for outputs

Pull Request - State: open - Opened by kaijli 2 months ago

#39 - refactor annotation

Issue - State: open - Opened by kaijli 3 months ago

#39 - refactor annotation

Issue - State: open - Opened by kaijli 3 months ago

#38 - Update mg annotation docs

Pull Request - State: closed - Opened by kaijli 3 months ago - 4 comments

#38 - Update mg annotation docs

Pull Request - State: closed - Opened by kaijli 3 months ago - 4 comments

#37 - IMG 5.3 update - databases

Issue - State: open - Opened by aclum 5 months ago - 10 comments

#37 - IMG 5.3 update - databases

Issue - State: open - Opened by aclum 5 months ago - 5 comments

#36 - annotation update to 5.3 -genomad

Issue - State: open - Opened by aclum 5 months ago - 8 comments

#36 - annotation update to 5.3 -genomad

Issue - State: open - Opened by aclum 5 months ago - 10 comments

#35 - rfam memory and jaws warnings

Pull Request - State: closed - Opened by kaijli 6 months ago

#35 - rfam memory and jaws warnings

Pull Request - State: closed - Opened by kaijli 6 months ago

#34 - removed crt duplicate outputs

Pull Request - State: closed - Opened by kaijli 7 months ago

#34 - removed crt duplicate outputs

Pull Request - State: closed - Opened by kaijli 7 months ago

#33 - added stats.json to output file list

Pull Request - State: closed - Opened by kaijli 7 months ago

#33 - added stats.json to output file list

Pull Request - State: closed - Opened by kaijli 7 months ago

#32 - Adding wdl linter github action

Pull Request - State: closed - Opened by aclum 7 months ago - 1 comment

#32 - Adding wdl linter github action

Pull Request - State: closed - Opened by aclum 7 months ago - 1 comment

#31 - issue with crt.wdl

Issue - State: closed - Opened by aclum 7 months ago

#31 - issue with crt.wdl

Issue - State: closed - Opened by aclum 7 months ago

#30 - add github action to run wdl linter

Issue - State: closed - Opened by aclum 7 months ago

#30 - add github action to run wdl linter

Issue - State: closed - Opened by aclum 7 months ago

#29 - v1.0 with mapping

Pull Request - State: closed - Opened by kaijli 8 months ago - 1 comment

#29 - v1.0 with mapping

Pull Request - State: closed - Opened by kaijli 8 months ago - 1 comment

#28 - Mapping - basic changes

Pull Request - State: closed - Opened by kaijli 8 months ago - 3 comments

#28 - Mapping - basic changes

Pull Request - State: closed - Opened by kaijli 8 months ago - 3 comments

#27 - Mapping

Pull Request - State: closed - Opened by kaijli 10 months ago - 1 comment

#27 - Mapping

Pull Request - State: closed - Opened by kaijli 10 months ago - 1 comment

#26 - update product mapping files to a specific path

Pull Request - State: closed - Opened by chienchi 11 months ago

#26 - update product mapping files to a specific path

Pull Request - State: closed - Opened by chienchi 11 months ago

#25 - update product mapping files

Issue - State: closed - Opened by aclum 12 months ago - 8 comments

#25 - update product mapping files

Issue - State: closed - Opened by aclum 12 months ago - 8 comments

#24 - add support for Contig Mapping File

Issue - State: closed - Opened by aclum about 1 year ago - 10 comments

#24 - add support for Contig Mapping File

Issue - State: closed - Opened by aclum about 1 year ago - 10 comments

#23 - update-v1

Issue - State: closed - Opened by mflynn-lanl over 1 year ago - 10 comments

#23 - update-v1

Issue - State: closed - Opened by mflynn-lanl over 1 year ago - 10 comments

#22 - 19 lineage scaffold

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#22 - 19 lineage scaffold

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#21 - added support for relase management through github actions

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#21 - added support for relase management through github actions

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#20 - Create_releases

Issue - State: closed - Opened by Michal-Babins over 1 year ago - 1 comment

#20 - Create_releases

Issue - State: closed - Opened by Michal-Babins over 1 year ago - 1 comment

#19 - add scaffold lineage file to wdl outputs

Issue - State: closed - Opened by aclum over 1 year ago - 4 comments

#19 - add scaffold lineage file to wdl outputs

Issue - State: closed - Opened by aclum over 1 year ago - 4 comments

#18 - Werkflow to master branch for annotation

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#17 - update CRT to pull form public repo

Issue - State: closed - Opened by aclum over 1 year ago - 4 comments

#17 - update CRT to pull form public repo

Issue - State: closed - Opened by aclum over 1 year ago - 4 comments

#16 - Update to new version of img-nr database

Issue - State: closed - Opened by aclum over 1 year ago - 3 comments
Labels: backlog

#16 - Update to new version of img-nr database

Issue - State: closed - Opened by aclum over 1 year ago - 3 comments
Labels: backlog

#15 - CRT 1.8.4, prodigal patch, Dockerfile updates for public img-omics repo

Pull Request - State: closed - Opened by aclum almost 2 years ago - 2 comments

#15 - CRT 1.8.4, prodigal patch, Dockerfile updates for public img-omics repo

Pull Request - State: closed - Opened by aclum almost 2 years ago - 2 comments

#14 - img annotation 5.1.14 updates

Issue - State: closed - Opened by aclum almost 2 years ago - 1 comment

#14 - img annotation 5.1.14 updates

Issue - State: closed - Opened by aclum almost 2 years ago - 1 comment

#13 - Update annotation workflow to sync with JGI annotation version 5.1

Issue - State: closed - Opened by aclum about 2 years ago - 2 comments

#13 - Update annotation workflow to sync with JGI annotation version 5.1

Issue - State: closed - Opened by aclum about 2 years ago - 2 comments

#12 - 5.1 sync

Pull Request - State: closed - Opened by aclum about 2 years ago

#12 - 5.1 sync

Pull Request - State: closed - Opened by aclum about 2 years ago

#10 - example inputs.json is not valid

Issue - State: closed - Opened by aclum about 2 years ago - 1 comment

#10 - example inputs.json is not valid

Issue - State: closed - Opened by aclum about 2 years ago - 1 comment

#9 - added support for triplets

Pull Request - State: open - Opened by Michal-Babins about 3 years ago

#9 - added support for triplets

Pull Request - State: open - Opened by Michal-Babins about 3 years ago

#8 - Analyze and resolve issue with missing annotation outputs for IMG

Issue - State: closed - Opened by ssarrafan about 3 years ago - 8 comments
Labels: backlog

#8 - Analyze and resolve issue with missing annotation outputs for IMG

Issue - State: closed - Opened by ssarrafan about 3 years ago - 8 comments
Labels: backlog

#7 - Add outputs and adjust split size

Pull Request - State: open - Opened by scanon about 3 years ago - 1 comment

#7 - Add outputs and adjust split size

Pull Request - State: open - Opened by scanon about 3 years ago - 1 comment

#6 - copy output files

Issue - State: closed - Opened by mflynn-lanl over 3 years ago - 3 comments

#5 - Workflows - Test small data sets for workflows (mg_annotation)

Issue - State: closed - Opened by ssarrafan almost 4 years ago - 7 comments

#4 - Workflows - Test large data sets for workflows (mg_annotation)

Issue - State: closed - Opened by ssarrafan almost 4 years ago - 4 comments
Labels: workflows

#3 - Update docs

Pull Request - State: closed - Opened by hubin-keio almost 4 years ago

#2 - Update README.md database license information

Pull Request - State: closed - Opened by kltm over 4 years ago

#1 - WIP: Add documentation and example data

Pull Request - State: closed - Opened by scanon over 4 years ago