microbiomedata/metamags issues and pull requests

#63 - Implement GH action to build and push updates

Issue - State: open - Opened by mbthornton-lbl 2 months ago
Labels: backlog

#63 - Implement GH action to build and push updates

Issue - State: open - Opened by mbthornton-lbl 2 months ago
Labels: backlog

#62 - 61 eukaryotic evaluation has completeness and contamination as strings

Pull Request - State: closed - Opened by mbthornton-lbl 2 months ago

#62 - 61 eukaryotic evaluation has completeness and contamination as strings

Pull Request - State: closed - Opened by mbthornton-lbl 2 months ago

#61 - eukaryotic_evaluation has completeness and contamination as strings

Issue - State: closed - Opened by mbthornton-lbl 3 months ago

#61 - eukaryotic_evaluation has completeness and contamination as strings

Issue - State: closed - Opened by mbthornton-lbl 3 months ago

#60 - Update documentation to use SVG image instead of PNG image

Pull Request - State: closed - Opened by kaijli 3 months ago

#60 - Update documentation to use SVG image instead of PNG image

Pull Request - State: closed - Opened by kaijli 3 months ago

#59 - Fix issue causing diagram to be stretched vertically in web docs

Pull Request - State: closed - Opened by eecavanna 3 months ago - 1 comment

#59 - Fix issue causing diagram to be stretched vertically in web docs

Pull Request - State: closed - Opened by eecavanna 3 months ago - 1 comment

#58 - Graphic in documentation is vertically stretched (deviating from native proportions)

Issue - State: closed - Opened by eecavanna 3 months ago - 1 comment
Labels: bug, documentation

#58 - Graphic in documentation is vertically stretched (deviating from native proportions)

Issue - State: closed - Opened by eecavanna 3 months ago - 1 comment
Labels: bug, documentation

#57 - Replace diagram with smaller version (decreasing file size by 10x)

Pull Request - State: closed - Opened by eecavanna 3 months ago - 5 comments

#57 - Replace diagram with smaller version (decreasing file size by 10x)

Pull Request - State: closed - Opened by eecavanna 3 months ago - 5 comments

#56 - Reduce file size of graphic in documentation (currently 2.5 MB)

Issue - State: closed - Opened by eecavanna 3 months ago
Labels: bug, documentation

#56 - Reduce file size of graphic in documentation (currently 2.5 MB)

Issue - State: closed - Opened by eecavanna 3 months ago
Labels: bug, documentation

#55 - 54 update num_trna to num_t_rna in mbin statspy

Pull Request - State: closed - Opened by chienchi 4 months ago

#55 - 54 update num_trna to num_t_rna in mbin statspy

Pull Request - State: closed - Opened by chienchi 4 months ago

#54 - update num_tRNA to num_t_rna in mbin_stats.py

Issue - State: closed - Opened by aclum 4 months ago - 1 comment

#54 - update num_tRNA to num_t_rna in mbin_stats.py

Issue - State: closed - Opened by aclum 4 months ago - 1 comment

#53 - 52 add eukcc results to mags stats.json

Pull Request - State: closed - Opened by chienchi 5 months ago

#53 - 52 add eukcc results to mags stats.json

Pull Request - State: closed - Opened by chienchi 5 months ago

#52 - Add eukcc results to _mags_stats.json

Issue - State: closed - Opened by aclum 5 months ago

#52 - Add eukcc results to _mags_stats.json

Issue - State: closed - Opened by aclum 5 months ago

#51 - 49 total bases and gene counts issues

Pull Request - State: closed - Opened by chienchi 5 months ago - 1 comment

#51 - 49 total bases and gene counts issues

Pull Request - State: closed - Opened by chienchi 5 months ago - 1 comment

#50 - 48 updates to create tar python script and corresponding package wdl task

Pull Request - State: closed - Opened by chienchi 5 months ago

#50 - 48 updates to create tar python script and corresponding package wdl task

Pull Request - State: closed - Opened by chienchi 5 months ago

#49 - total bases and gene counts issues

Issue - State: closed - Opened by aclum 6 months ago - 1 comment

#49 - total bases and gene counts issues

Issue - State: closed - Opened by aclum 6 months ago - 1 comment

#48 - updates to create tar python script and corresponding package WDL task

Issue - State: closed - Opened by aclum 6 months ago

#48 - updates to create tar python script and corresponding package WDL task

Issue - State: closed - Opened by aclum 6 months ago

#47 - Release v1.3.7

Pull Request - State: closed - Opened by scanon 6 months ago - 1 comment

#47 - Release v1.3.7

Pull Request - State: closed - Opened by scanon 6 months ago - 1 comment

#46 - Speed up packaging

Issue - State: closed - Opened by scanon 6 months ago

#46 - Speed up packaging

Issue - State: closed - Opened by scanon 6 months ago

#45 - Speedup packing

Pull Request - State: closed - Opened by scanon 6 months ago - 3 comments

#45 - Speedup packing

Pull Request - State: closed - Opened by scanon 6 months ago - 3 comments

#44 - Fix staging

Pull Request - State: closed - Opened by scanon 6 months ago - 1 comment

#44 - Fix staging

Pull Request - State: closed - Opened by scanon 6 months ago - 1 comment

#43 - 37 create tarfilespy not generating correct output when using nmdc style identifiers

Pull Request - State: closed - Opened by chienchi 6 months ago

#43 - 37 create tarfilespy not generating correct output when using nmdc style identifiers

Pull Request - State: closed - Opened by chienchi 6 months ago

#42 - 41 fix jaws validation error

Pull Request - State: closed - Opened by aclum 7 months ago

#42 - 41 fix jaws validation error

Pull Request - State: closed - Opened by aclum 7 months ago

#41 - fix wdl validation error

Issue - State: closed - Opened by aclum 7 months ago

#41 - fix wdl validation error

Issue - State: closed - Opened by aclum 7 months ago

#40 - Add wdl linter github action

Pull Request - State: closed - Opened by aclum 7 months ago

#40 - Add wdl linter github action

Pull Request - State: closed - Opened by aclum 7 months ago

#39 - Add wdl linter github action

Issue - State: closed - Opened by aclum 7 months ago

#39 - Add wdl linter github action

Issue - State: closed - Opened by aclum 7 months ago

#38 - add condition to check barplot.pdf file generated.

Pull Request - State: closed - Opened by chienchi 7 months ago

#37 - create_tarfiles.py not generating correct output when using nmdc style identifiers

Issue - State: closed - Opened by aclum 7 months ago - 9 comments
Labels: bug

#37 - create_tarfiles.py not generating correct output when using nmdc style identifiers

Issue - State: closed - Opened by aclum 7 months ago - 9 comments
Labels: bug

#36 - Fix file name for eukcc

Pull Request - State: closed - Opened by scanon 7 months ago

#36 - Fix file name for eukcc

Pull Request - State: closed - Opened by scanon 7 months ago

#35 - fix LQ bin count and condition

Pull Request - State: closed - Opened by chienchi 7 months ago

#35 - fix LQ bin count and condition

Pull Request - State: closed - Opened by chienchi 7 months ago

#34 - Sample without LQ mags failed on metaMAGs

Issue - State: closed - Opened by chienchi 7 months ago

#34 - Sample without LQ mags failed on metaMAGs

Issue - State: closed - Opened by chienchi 7 months ago

#33 - update eukcc treehandler.py script to avoid quoted-node-names issue

Pull Request - State: closed - Opened by chienchi 9 months ago - 1 comment

#33 - update eukcc treehandler.py script to avoid quoted-node-names issue

Pull Request - State: closed - Opened by chienchi 9 months ago - 1 comment

#32 - eukCC failed on quoted node names.

Issue - State: closed - Opened by chienchi 9 months ago - 1 comment
Labels: bug

#32 - eukCC failed on quoted node names.

Issue - State: closed - Opened by chienchi 9 months ago - 1 comment
Labels: bug

#31 - Add eukcc component to binning workflow

Pull Request - State: closed - Opened by chienchi 10 months ago

#31 - Add eukcc component to binning workflow

Pull Request - State: closed - Opened by chienchi 10 months ago

#30 - 29 add support for passing a contig name mapping file to mbinpy

Pull Request - State: closed - Opened by chienchi 10 months ago - 1 comment

#30 - 29 add support for passing a contig name mapping file to mbinpy

Pull Request - State: closed - Opened by chienchi 10 months ago - 1 comment

#29 - Add support for passing a contig name mapping file to mbin.py

Issue - State: closed - Opened by aclum 10 months ago - 1 comment

#29 - Add support for passing a contig name mapping file to mbin.py

Issue - State: closed - Opened by aclum 10 months ago - 1 comment

#28 - add eukcc component to binning workflow

Issue - State: closed - Opened by aclum 10 months ago - 2 comments

#28 - add eukcc component to binning workflow

Issue - State: closed - Opened by aclum 10 months ago - 2 comments

#27 - updated container from Neha that has the eukcc component

Pull Request - State: closed - Opened by chienchi 10 months ago

#27 - updated container from Neha that has the eukcc component

Pull Request - State: closed - Opened by chienchi 10 months ago

#26 - Error in package tasks

Issue - State: closed - Opened by scanon 10 months ago - 4 comments
Labels: bug

#26 - Error in package tasks

Issue - State: closed - Opened by scanon 10 months ago - 4 comments
Labels: bug

#25 - remove JGI mbin files from Docker folder

Issue - State: closed - Opened by aclum 10 months ago - 3 comments

#25 - remove JGI mbin files from Docker folder

Issue - State: closed - Opened by aclum 10 months ago - 3 comments

#24 - Remove source mbin files

Pull Request - State: closed - Opened by aclum 10 months ago

#24 - Remove source mbin files

Pull Request - State: closed - Opened by aclum 10 months ago

#23 - 22 review mag output files

Pull Request - State: closed - Opened by chienchi 11 months ago

#23 - 22 review mag output files

Pull Request - State: closed - Opened by chienchi 11 months ago

#22 - review MAG output files

Issue - State: closed - Opened by aclum 12 months ago - 4 comments

#22 - review MAG output files

Issue - State: closed - Opened by aclum 12 months ago - 4 comments

#21 - 66 fix checkm db path and add new data visualizations

Pull Request - State: closed - Opened by chienchi 12 months ago

#21 - 66 fix checkm db path and add new data visualizations

Pull Request - State: closed - Opened by chienchi 12 months ago

#20 - 66 fix checkm db path and add new data visualizations

Pull Request - State: closed - Opened by chienchi 12 months ago - 1 comment
Labels: bug, enhancement

#20 - 66 fix checkm db path and add new data visualizations

Pull Request - State: closed - Opened by chienchi 12 months ago - 1 comment
Labels: bug, enhancement

#19 - silent error during call-mbin_nmdc

Issue - State: closed - Opened by aclum 12 months ago - 5 comments
Labels: bug

#19 - silent error during call-mbin_nmdc

Issue - State: closed - Opened by aclum 12 months ago - 5 comments
Labels: bug

#18 - 17 mags stats files content are empty even there are binning result

Pull Request - State: closed - Opened by chienchi about 1 year ago

#18 - 17 mags stats files content are empty even there are binning result

Pull Request - State: closed - Opened by chienchi about 1 year ago

#17 - MAGs_stats files content are empty even there are binning result.

Issue - State: closed - Opened by chienchi about 1 year ago

#17 - MAGs_stats files content are empty even there are binning result.

Issue - State: closed - Opened by chienchi about 1 year ago

#16 - added release workflow

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#16 - added release workflow

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

#15 - Make release workflow

Issue - State: closed - Opened by Michal-Babins over 1 year ago

#15 - Make release workflow

Issue - State: closed - Opened by Michal-Babins over 1 year ago

#14 - Update wdl and docker to v0.4 of mags binning pipeline

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago - 2 comments

#14 - Update wdl and docker to v0.4 of mags binning pipeline

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago - 2 comments

#13 - Werkflow to master for mags

Pull Request - State: closed - Opened by Michal-Babins over 1 year ago

GitHub / microbiomedata/metamags issues and pull requests