Ecosyste.ms: Issues

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GitHub / microbiomedata/kaiko_metaproteome issues and pull requests

#22 - Update Kaiko_4.py

Pull Request - State: closed - Opened by CamiloPosso 4 months ago

#22 - Update Kaiko_4.py

Pull Request - State: closed - Opened by CamiloPosso 4 months ago

#21 - Adding Kaiko 2.0

Pull Request - State: closed - Opened by CamiloPosso 4 months ago

#21 - Adding Kaiko 2.0

Pull Request - State: closed - Opened by CamiloPosso 4 months ago

#20 - Kaiko 2.0

Pull Request - State: closed - Opened by CamiloPosso 4 months ago

#20 - Kaiko 2.0

Pull Request - State: closed - Opened by CamiloPosso 4 months ago

#19 - add field to config for taxa stats

Pull Request - State: closed - Opened by picowatt 4 months ago

#18 - Benchmarking of Kaiko

Issue - State: open - Opened by CamiloPosso about 1 year ago

#18 - Benchmarking of Kaiko

Issue - State: open - Opened by CamiloPosso about 1 year ago

#17 - Uniprot Reference Proteome integration

Issue - State: closed - Opened by CamiloPosso about 1 year ago - 1 comment

#16 - Finish implementation of UniprotKB database in Kaiko

Issue - State: open - Opened by CamiloPosso over 1 year ago - 1 comment

#16 - Finish implementation of UniprotKB database in Kaiko

Issue - State: open - Opened by CamiloPosso over 1 year ago - 1 comment

#15 - Finish multifile train script for Casanovo

Issue - State: open - Opened by CamiloPosso over 1 year ago - 1 comment

#14 - FASTA aggregation improvements

Issue - State: closed - Opened by CamiloPosso over 1 year ago - 2 comments

#14 - FASTA aggregation improvements

Issue - State: closed - Opened by CamiloPosso over 1 year ago - 2 comments

#13 - kaiko and casanovo multiple comparisons

Pull Request - State: open - Opened by jynlee7 over 1 year ago - 3 comments

#12 - kaiko comparison to casanovo

Pull Request - State: closed - Opened by jynlee7 over 1 year ago

#11 - Kansas soil sanity check

Issue - State: closed - Opened by CamiloPosso over 1 year ago - 5 comments

#10 - Kansas soil sanity check

Issue - State: closed - Opened by CamiloPosso over 1 year ago - 2 comments

#9 - Updated reading of mgf files

Pull Request - State: closed - Opened by CamiloPosso over 1 year ago

#7 - Improving detail in Kaiko intermediate output

Pull Request - State: closed - Opened by CamiloPosso over 1 year ago

#6 - Create FastAPI framework for Kaiko

Issue - State: open - Opened by CamiloPosso almost 2 years ago

#5 - Benchmarking of FASTA file

Issue - State: open - Opened by CamiloPosso almost 2 years ago - 4 comments
Labels: backlog

#4 - Improve denovo sequencing model in Kaiko

Issue - State: open - Opened by CamiloPosso almost 2 years ago

#3 - Improve logic behind taxa scoring an FASTA aggregation

Issue - State: closed - Opened by CamiloPosso almost 2 years ago - 4 comments

#2 - Improve detail of Kaiko output

Issue - State: closed - Opened by CamiloPosso almost 2 years ago - 1 comment

#1 - Adding file to get the trained model for denovo identification

Pull Request - State: closed - Opened by CamiloPosso almost 2 years ago