Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / microbial-pangenomes-lab/panfeed issues and pull requests

#32 - panfeed-get-kmers: avoid memory leaks with a lot of clusters

Pull Request - State: closed - Opened by mgalardini 6 months ago

#30 - possibility to parallelize panfeed-get-kmers.py

Issue - State: closed - Opened by aababc1 about 1 year ago - 2 comments
Labels: good first issue, question

#29 - Properly sort nucleotide sequences

Pull Request - State: closed - Opened by mgalardini over 1 year ago

#28 - implement unit tests for panfeed

Pull Request - State: closed - Opened by haneubau over 1 year ago

#27 - Double sort in plots

Pull Request - State: closed - Opened by mgalardini over 1 year ago

#26 - Plotting bug

Pull Request - State: closed - Opened by mgalardini over 1 year ago

#25 - Version bump

Pull Request - State: closed - Opened by mgalardini almost 2 years ago

#24 - Add the option to stop execution if anything is missing

Pull Request - State: closed - Opened by mgalardini almost 2 years ago

#23 - More plot fixes

Pull Request - State: closed - Opened by mgalardini almost 2 years ago

#22 - Plot fix

Pull Request - State: closed - Opened by mgalardini almost 2 years ago

#21 - Utility scripts overhaul

Pull Request - State: closed - Opened by mgalardini almost 2 years ago

#20 - add convenience scripts into scripts folder

Pull Request - State: closed - Opened by haneubau almost 2 years ago

#19 - Add options to provide fasta files and compress outputs

Pull Request - State: closed - Opened by mgalardini almost 2 years ago

#18 - Make sure we save integers for hashes_to_patterns.tsv

Pull Request - State: closed - Opened by mgalardini about 2 years ago

#17 - Revert speed regression

Pull Request - State: closed - Opened by mgalardini about 2 years ago

#16 - Avoid double header in kmers.tsv file

Pull Request - State: closed - Opened by mgalardini over 2 years ago

#15 - Keep track of gene strand and k-mer strand relative to it

Pull Request - State: closed - Opened by mgalardini over 2 years ago

#14 - New argument to count k-mers in strains having the gene

Pull Request - State: closed - Opened by mgalardini over 2 years ago

#13 - added queue limits to reader and writer queue

Pull Request - State: closed - Opened by haneubau over 2 years ago

#12 - New argument to extract kmers/patterns from some genes only

Pull Request - State: closed - Opened by mgalardini over 2 years ago

#11 - More efficient multithreading

Pull Request - State: closed - Opened by mgalardini almost 3 years ago

#10 - Multiple threads

Pull Request - State: closed - Opened by mgalardini almost 3 years ago

#9 - Update panfeed.py

Pull Request - State: closed - Opened by haneubau almost 3 years ago

#8 - Target strain iteration

Pull Request - State: closed - Opened by haneubau almost 3 years ago

#7 - Update panfeed.py

Pull Request - State: closed - Opened by haneubau almost 3 years ago

#6 - Query size and k mer length

Pull Request - State: closed - Opened by haneubau about 3 years ago

#5 - Separate outputs + MAF filtering

Pull Request - State: closed - Opened by mgalardini about 3 years ago

#4 - iteration and cutting overhaul

Pull Request - State: closed - Opened by mgalardini about 3 years ago

#3 - Redundant patterns

Pull Request - State: closed - Opened by mgalardini about 3 years ago

#2 - Merge other changes since last PR

Pull Request - State: closed - Opened by mgalardini about 3 years ago

#1 - Create an actual python package

Pull Request - State: closed - Opened by mgalardini about 3 years ago