Ecosyste.ms: Issues

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GitHub / michabirklbauer/internal_ions issues and pull requests

#61 - Temporary fix for #58 and #59, [attempted] fix for #48

Pull Request - State: open - Opened by michabirklbauer 19 days ago - 3 comments

#61 - Temporary fix for #58 and #59, [attempted] fix for #48

Pull Request - State: open - Opened by michabirklbauer 19 days ago - 3 comments

#60 - Revamp filtering in tab 2

Pull Request - State: closed - Opened by levitsky 24 days ago

#60 - Revamp filtering in tab 2

Pull Request - State: closed - Opened by levitsky 24 days ago

#59 - psm['spectrum_id'] is not integer with pepxml

Issue - State: open - Opened by levitsky about 2 months ago - 2 comments

#59 - psm['spectrum_id'] is not integer with pepxml

Issue - State: open - Opened by levitsky about 2 months ago - 2 comments

#58 - KeyError: 'rtinseconds'

Issue - State: open - Opened by levitsky about 2 months ago - 1 comment

#58 - KeyError: 'rtinseconds'

Issue - State: open - Opened by levitsky about 2 months ago - 1 comment

#57 - Add ruler for threshold of identification score in 2nd tab

Issue - State: open - Opened by veitveit about 2 months ago - 1 comment

#57 - Add ruler for threshold of identification score in 2nd tab

Issue - State: open - Opened by veitveit about 2 months ago - 1 comment

#56 - Option to download figures or generate report

Issue - State: open - Opened by michabirklbauer 3 months ago
Labels: optional

#56 - Option to download figures or generate report

Issue - State: open - Opened by michabirklbauer 3 months ago
Labels: optional

#55 - Cannot go back to manual input in the Fraggraph tab

Issue - State: open - Opened by louisebuur 3 months ago - 1 comment
Labels: bug

#55 - Cannot go back to manual input in the Fraggraph tab

Issue - State: open - Opened by louisebuur 3 months ago - 1 comment
Labels: bug

#54 - fix #47

Pull Request - State: closed - Opened by michabirklbauer 3 months ago
Labels: bugfix

#54 - fix #47

Pull Request - State: closed - Opened by michabirklbauer 3 months ago
Labels: bugfix

#53 - Advanced filtering options

Pull Request - State: closed - Opened by michabirklbauer 3 months ago
Labels: enhancement

#53 - Advanced filtering options

Pull Request - State: closed - Opened by michabirklbauer 3 months ago
Labels: enhancement

#52 - fix for #51

Pull Request - State: closed - Opened by michabirklbauer 3 months ago
Labels: bugfix

#52 - fix for #51

Pull Request - State: closed - Opened by michabirklbauer 3 months ago
Labels: bugfix

#51 - Error for large fragment-centric table

Issue - State: closed - Opened by veitveit 5 months ago - 3 comments

#51 - Error for large fragment-centric table

Issue - State: closed - Opened by veitveit 5 months ago - 3 comments

#50 - Add charge state to spectrum-centric table

Issue - State: open - Opened by veitveit 5 months ago - 1 comment
Labels: optional

#50 - Add charge state to spectrum-centric table

Issue - State: open - Opened by veitveit 5 months ago - 1 comment
Labels: optional

#49 - Filtering options for spectrum-centric and fragment-centric views

Issue - State: closed - Opened by veitveit 5 months ago - 3 comments

#49 - Filtering options for spectrum-centric and fragment-centric views

Issue - State: closed - Opened by veitveit 5 months ago - 3 comments

#48 - Duplicated spectra in spectrum-centric dataframe

Issue - State: open - Opened by veitveit 5 months ago - 4 comments
Labels: help wanted, question

#48 - Duplicated spectra in spectrum-centric dataframe

Issue - State: open - Opened by veitveit 5 months ago - 4 comments
Labels: help wanted, question

#47 - Reading MaxQuant files fail

Issue - State: closed - Opened by louisebuur 5 months ago
Labels: bug

#47 - Reading MaxQuant files fail

Issue - State: closed - Opened by louisebuur 5 months ago
Labels: bug

#46 - Running fragment explorer with ProteomeTools files fails

Issue - State: closed - Opened by louisebuur 5 months ago - 4 comments
Labels: bug, help wanted

#46 - Running fragment explorer with ProteomeTools files fails

Issue - State: closed - Opened by louisebuur 5 months ago - 4 comments
Labels: bug, help wanted

#45 - fix mail links

Pull Request - State: closed - Opened by michabirklbauer 5 months ago
Labels: bugfix

#45 - fix mail links

Pull Request - State: closed - Opened by michabirklbauer 5 months ago
Labels: bugfix

#44 - fix for #42

Pull Request - State: closed - Opened by michabirklbauer 5 months ago
Labels: bugfix

#44 - fix for #42

Pull Request - State: closed - Opened by michabirklbauer 5 months ago
Labels: bugfix

#43 - Handle missing intensity values for precursors

Pull Request - State: closed - Opened by michabirklbauer 5 months ago - 1 comment
Labels: bugfix

#43 - Handle missing intensity values for precursors

Pull Request - State: closed - Opened by michabirklbauer 5 months ago - 1 comment
Labels: bugfix

#41 - Allow all identification file formats

Pull Request - State: closed - Opened by michabirklbauer 6 months ago
Labels: documentation, enhancement

#41 - Allow all identification file formats

Pull Request - State: closed - Opened by michabirklbauer 6 months ago
Labels: documentation, enhancement

#40 - Error reading mgf file

Issue - State: closed - Opened by veitveit 6 months ago - 4 comments
Labels: bug

#40 - Error reading mgf file

Issue - State: closed - Opened by veitveit 6 months ago - 4 comments
Labels: bug

#39 - Add MaxQuant input (PSMs)

Issue - State: closed - Opened by veitveit 6 months ago

#39 - Add MaxQuant input (PSMs)

Issue - State: closed - Opened by veitveit 6 months ago

#38 - Cleanup orphaned code

Pull Request - State: closed - Opened by michabirklbauer 6 months ago
Labels: enhancement

#38 - Cleanup orphaned code

Pull Request - State: closed - Opened by michabirklbauer 6 months ago
Labels: enhancement

#37 - Issue #32 and #26

Pull Request - State: closed - Opened by arthur-grimaud 7 months ago
Labels: enhancement

#37 - Issue #32 and #26

Pull Request - State: closed - Opened by arthur-grimaud 7 months ago
Labels: enhancement

#36 - figure text, plot margins etc. #4

Pull Request - State: closed - Opened by carolinelennartsson 7 months ago

#36 - figure text, plot margins etc. #4

Pull Request - State: closed - Opened by carolinelennartsson 7 months ago

#35 - fix for #29 (Filter options in Tab2)

Pull Request - State: closed - Opened by michabirklbauer 8 months ago
Labels: enhancement

#35 - fix for #29 (Filter options in Tab2)

Pull Request - State: closed - Opened by michabirklbauer 8 months ago
Labels: enhancement

#34 - Use cases for showing the power of internal ions

Issue - State: open - Opened by veitveit 8 months ago - 6 comments

#34 - Use cases for showing the power of internal ions

Issue - State: open - Opened by veitveit 8 months ago - 6 comments

#33 - Find suitable example data

Issue - State: open - Opened by veitveit 8 months ago

#33 - Find suitable example data

Issue - State: open - Opened by veitveit 8 months ago

#32 - Merge tabs 3 and 4 ?

Issue - State: closed - Opened by arthur-grimaud 8 months ago

#32 - Merge tabs 3 and 4 ?

Issue - State: closed - Opened by arthur-grimaud 8 months ago

#31 - [spectra] Visualise ion types

Issue - State: open - Opened by carolinelennartsson 8 months ago

#31 - [spectra] Visualise ion types

Issue - State: open - Opened by carolinelennartsson 8 months ago

#30 - Seperate documentation tab

Issue - State: open - Opened by carolinelennartsson 8 months ago - 4 comments
Labels: documentation

#30 - Seperate documentation tab

Issue - State: open - Opened by carolinelennartsson 8 months ago - 4 comments
Labels: documentation

#29 - Filter selection in Tab 2

Issue - State: closed - Opened by michabirklbauer 9 months ago
Labels: question

#29 - Filter selection in Tab 2

Issue - State: closed - Opened by michabirklbauer 9 months ago
Labels: question

#28 - Moved common parameters to the sidebar

Pull Request - State: closed - Opened by michabirklbauer 9 months ago
Labels: enhancement

#28 - Moved common parameters to the sidebar

Pull Request - State: closed - Opened by michabirklbauer 9 months ago
Labels: enhancement

#25 - Implementation of site determining plots, fixes for #18, #19, #21 and #22

Pull Request - State: closed - Opened by michabirklbauer 9 months ago - 1 comment
Labels: enhancement

#25 - Implementation of site determining plots, fixes for #18, #19, #21 and #22

Pull Request - State: closed - Opened by michabirklbauer 9 months ago - 1 comment
Labels: enhancement

#24 - Common parameters in the sidebar

Issue - State: closed - Opened by michabirklbauer 9 months ago - 1 comment

#24 - Common parameters in the sidebar

Issue - State: closed - Opened by michabirklbauer 9 months ago - 1 comment

#23 - Merging of spectra in Tab 3 ?

Issue - State: closed - Opened by arthur-grimaud 9 months ago - 1 comment

#23 - Merging of spectra in Tab 3 ?

Issue - State: closed - Opened by arthur-grimaud 9 months ago - 1 comment

#22 - [Fraggraph] Missing functions in frag_graph_report.py

Issue - State: closed - Opened by michabirklbauer 9 months ago - 2 comments

#22 - [Fraggraph] Missing functions in frag_graph_report.py

Issue - State: closed - Opened by michabirklbauer 9 months ago - 2 comments

#21 - Max isotope and max charge filtering

Issue - State: closed - Opened by michabirklbauer 9 months ago - 1 comment

#21 - Max isotope and max charge filtering

Issue - State: closed - Opened by michabirklbauer 9 months ago - 1 comment

#20 - Fragannot results

Issue - State: closed - Opened by michabirklbauer 9 months ago - 2 comments

#20 - Fragannot results

Issue - State: closed - Opened by michabirklbauer 9 months ago - 2 comments

#19 - Parsing modification positions of peptidoform

Issue - State: closed - Opened by michabirklbauer 9 months ago - 4 comments

#19 - Parsing modification positions of peptidoform

Issue - State: closed - Opened by michabirklbauer 9 months ago - 4 comments

#18 - [Fraggraph] ms-level information not available in MGF

Issue - State: closed - Opened by michabirklbauer 9 months ago - 3 comments
Labels: question

#18 - [Fraggraph] ms-level information not available in MGF

Issue - State: closed - Opened by michabirklbauer 9 months ago - 3 comments
Labels: question

#17 - mzML support?

Issue - State: open - Opened by michabirklbauer 9 months ago - 2 comments
Labels: optional

#16 - updates

Pull Request - State: closed - Opened by michabirklbauer 9 months ago

#15 - [MERGE AFTER #14] Integration of FragGraph into Tab4

Pull Request - State: closed - Opened by michabirklbauer 9 months ago - 1 comment
Labels: enhancement

#14 - [MERGE AFTER #11] Add spectrum filtering functionality

Pull Request - State: closed - Opened by michabirklbauer 9 months ago - 1 comment
Labels: enhancement

#13 - Revert "Add missing changes from new implementation"

Pull Request - State: closed - Opened by michabirklbauer 9 months ago

#12 - Add missing changes from new implementation

Pull Request - State: closed - Opened by michabirklbauer 9 months ago

#11 - Full integration of everything we had in Fragment Explorer into Tab 2

Pull Request - State: closed - Opened by michabirklbauer 9 months ago
Labels: enhancement

#10 - Spectrum Selection

Pull Request - State: closed - Opened by michabirklbauer 9 months ago - 4 comments
Labels: enhancement

#9 - a start #6

Pull Request - State: closed - Opened by carolinelennartsson 10 months ago

#8 - Main Structure & Integration of Fragannot

Pull Request - State: closed - Opened by michabirklbauer 10 months ago - 4 comments
Labels: documentation, enhancement

#7 - Full integration of FragAnnot

Issue - State: closed - Opened by michabirklbauer 10 months ago

#6 - Create interface for spetrum selection (tab 3)

Issue - State: closed - Opened by michabirklbauer 10 months ago