Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mica-mni/micapipe issues and pull requests

#50 - Mica reports that it couldn't find any dwi file

Issue - State: closed - Opened by Neuro-en over 2 years ago - 4 comments

#50 - Mica reports that it couldn't find any dwi file

Issue - State: closed - Opened by Neuro-en over 2 years ago - 4 comments

#48 - Two resting state scans: before and after TMS

Issue - State: closed - Opened by dkp over 2 years ago - 3 comments

#48 - Two resting state scans: before and after TMS

Issue - State: closed - Opened by dkp over 2 years ago - 3 comments

#47 - Alternative distortion correction options

Issue - State: closed - Opened by dkp over 2 years ago - 2 comments

#47 - Alternative distortion correction options

Issue - State: closed - Opened by dkp over 2 years ago - 2 comments

#46 - Use existing freesurfer output from fmriprep or qsiprep

Issue - State: closed - Opened by dkp over 2 years ago - 1 comment

#46 - Use existing freesurfer output from fmriprep or qsiprep

Issue - State: closed - Opened by dkp over 2 years ago - 1 comment

#45 - example docker command in documentation incorrectly specifies freesurfer license

Issue - State: closed - Opened by dkp over 2 years ago - 2 comments

#45 - example docker command in documentation incorrectly specifies freesurfer license

Issue - State: closed - Opened by dkp over 2 years ago - 2 comments

#44 - [ENH] Add tedana support.

Pull Request - State: closed - Opened by ReinderVosDeWael almost 3 years ago
Labels: enhancement

#44 - [ENH] Add tedana support.

Pull Request - State: closed - Opened by ReinderVosDeWael almost 3 years ago
Labels: enhancement

#43 - Running micapipe_cleanup with Docker

Issue - State: closed - Opened by jinseo0904 almost 3 years ago - 9 comments

#43 - Running micapipe_cleanup with Docker

Issue - State: closed - Opened by jinseo0904 almost 3 years ago - 9 comments

#42 - 2 "missing" files in QC report

Issue - State: closed - Opened by mrribbits almost 3 years ago - 2 comments

#42 - 2 "missing" files in QC report

Issue - State: closed - Opened by mrribbits almost 3 years ago - 2 comments

#41 - Incorrect bvalues returned with processed multishell sequence.

Issue - State: closed - Opened by ajschadler12 almost 3 years ago - 2 comments
Labels: help wanted

#41 - Incorrect bvalues returned with processed multishell sequence.

Issue - State: closed - Opened by ajschadler12 almost 3 years ago - 2 comments
Labels: help wanted

#40 - MPC input

Issue - State: closed - Opened by hoptman almost 3 years ago - 1 comment

#40 - MPC input

Issue - State: closed - Opened by hoptman almost 3 years ago - 1 comment

#39 - Missing surface snapshots in QC report

Issue - State: closed - Opened by mrribbits almost 3 years ago - 5 comments

#39 - Missing surface snapshots in QC report

Issue - State: closed - Opened by mrribbits almost 3 years ago - 5 comments

#38 - Running micapipe_cleanup and other scripts

Issue - State: closed - Opened by mrribbits almost 3 years ago - 1 comment

#38 - Running micapipe_cleanup and other scripts

Issue - State: closed - Opened by mrribbits almost 3 years ago - 1 comment

#37 - 'Subject 01 doesn't have T1_nativepro warp to MNI152.'

Issue - State: closed - Opened by roryjpiper almost 3 years ago - 2 comments
Labels: help wanted

#37 - 'Subject 01 doesn't have T1_nativepro warp to MNI152.'

Issue - State: closed - Opened by roryjpiper almost 3 years ago - 2 comments
Labels: help wanted

#36 - Conte69 not generated from proc_structural

Issue - State: closed - Opened by roryjpiper almost 3 years ago - 2 comments

#36 - Conte69 not generated from proc_structural

Issue - State: closed - Opened by roryjpiper almost 3 years ago - 2 comments

#35 - conte69 surface problems

Issue - State: closed - Opened by hoptman almost 3 years ago - 2 comments

#35 - conte69 surface problems

Issue - State: closed - Opened by hoptman almost 3 years ago - 2 comments

#34 - Missing commas in lut_aparc_mics.csv prevent automatic parsing

Issue - State: closed - Opened by MarkNelson86 about 3 years ago - 1 comment

#34 - Missing commas in lut_aparc_mics.csv prevent automatic parsing

Issue - State: closed - Opened by MarkNelson86 about 3 years ago - 1 comment

#33 - Add option to use the the ss3t_csd_beta1 algorithm for single-shelled data.

Issue - State: closed - Opened by ajschadler12 about 3 years ago - 1 comment
Labels: enhancement

#33 - Add option to use the the ss3t_csd_beta1 algorithm for single-shelled data.

Issue - State: closed - Opened by ajschadler12 about 3 years ago - 1 comment
Labels: enhancement

#32 - Independent DWI sequences are concatenated in final output when processed together.

Issue - State: closed - Opened by ajschadler12 about 3 years ago - 2 comments
Labels: enhancement

#32 - Independent DWI sequences are concatenated in final output when processed together.

Issue - State: closed - Opened by ajschadler12 about 3 years ago - 2 comments
Labels: enhancement

#31 - Ran commands successfully but no results files generated

Issue - State: closed - Opened by jhx9327 about 3 years ago - 1 comment
Labels: help wanted

#31 - Ran commands successfully but no results files generated

Issue - State: closed - Opened by jhx9327 about 3 years ago - 1 comment
Labels: help wanted

#30 - draft detailed installation instructions

Pull Request - State: closed - Opened by PeerHerholz about 3 years ago

#30 - draft detailed installation instructions

Pull Request - State: closed - Opened by PeerHerholz about 3 years ago

#29 - -proc_rsfmri states "couldn't find 001 main rsfMRI scan: ls"

Issue - State: closed - Opened by ClaireSmid about 3 years ago - 1 comment

#29 - -proc_rsfmri states "couldn't find 001 main rsfMRI scan: ls"

Issue - State: closed - Opened by ClaireSmid about 3 years ago - 1 comment

#28 - Supply container for HPCs with older kernel versions

Issue - State: closed - Opened by ajschadler12 about 3 years ago - 1 comment
Labels: question

#28 - Supply container for HPCs with older kernel versions

Issue - State: closed - Opened by ajschadler12 about 3 years ago - 1 comment
Labels: question

#27 - frMRI QC, add SNR image of the clean timeseries and surface visualization of the YEO networks

Issue - State: closed - Opened by rcruces about 3 years ago - 1 comment
Labels: enhancement

#27 - frMRI QC, add SNR image of the clean timeseries and surface visualization of the YEO networks

Issue - State: closed - Opened by rcruces about 3 years ago - 1 comment
Labels: enhancement

#26 - Post_structural runs with errors - cannot find FreeSurfer license?

Issue - State: closed - Opened by ClaireSmid about 3 years ago - 2 comments
Labels: help wanted

#26 - Post_structural runs with errors - cannot find FreeSurfer license?

Issue - State: closed - Opened by ClaireSmid about 3 years ago - 2 comments
Labels: help wanted

#25 - subject_QC: Sankey diagram of DWI appears to be incomplete (orange) but it's not

Issue - State: closed - Opened by rcruces about 3 years ago - 2 comments
Labels: bug

#25 - subject_QC: Sankey diagram of DWI appears to be incomplete (orange) but it's not

Issue - State: closed - Opened by rcruces about 3 years ago - 2 comments
Labels: bug

#24 - adding task fmri stream / 3dDeconvolve / to micapipe

Issue - State: closed - Opened by neuroimagingdatascience over 3 years ago - 3 comments
Labels: enhancement

#24 - adding task fmri stream / 3dDeconvolve / to micapipe

Issue - State: closed - Opened by neuroimagingdatascience over 3 years ago - 3 comments
Labels: enhancement

#23 - adding JuBrain parcellation

Issue - State: closed - Opened by neuroimagingdatascience over 3 years ago - 4 comments
Labels: enhancement

#22 - add nilearn to Docker image

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#21 - Nilearn dependency doesn't exist?

Issue - State: closed - Opened by alffajardo over 3 years ago - 2 comments

#20 - Freesurfer license not found

Issue - State: closed - Opened by alffajardo over 3 years ago - 2 comments

#19 - ANTs error

Issue - State: closed - Opened by ClaireSmid over 3 years ago - 1 comment

#17 - update builds

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago - 1 comment

#16 - update builds

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#15 - nilearn is not listed in Dependencies

Issue - State: closed - Opened by GabrielPelletier over 3 years ago - 1 comment

#14 - 02_proc-dwi.sh fails to find nifti_capture.py

Issue - State: closed - Opened by GabrielPelletier over 3 years ago - 1 comment

#13 - Add wildcard to default lookup of -dwe_rpe scan?

Issue - State: closed - Opened by GabrielPelletier over 3 years ago - 2 comments

#12 - Rtd

Pull Request - State: closed - Opened by rcruces over 3 years ago

#11 - update virtualization branch

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#9 - initial draft of virtualization

Pull Request - State: closed - Opened by PeerHerholz over 3 years ago

#8 - Documentation recommends container, no container exists

Issue - State: closed - Opened by ikirker over 3 years ago - 2 comments
Labels: documentation

#7 - Flags test

Pull Request - State: closed - Opened by rcruces almost 4 years ago

#6 - Line 153 in 01_proc-struc_volumetric allows run_first_all to be prematurely terminated

Issue - State: closed - Opened by MarkNelson86 about 4 years ago - 4 comments
Labels: bug

#5 - change output directory structure to be bids conform

Issue - State: closed - Opened by PeerHerholz about 4 years ago - 5 comments
Labels: enhancement

#4 - Add .circleci/config.yml

Pull Request - State: closed - Opened by rcruces about 4 years ago

#3 - Add a Codacy badge to readme.md

Pull Request - State: closed - Opened by codacy-badger about 4 years ago

#2 - Create LICENSE

Pull Request - State: closed - Opened by rcruces over 4 years ago

#1 - Init

Pull Request - State: closed - Opened by ReinderVosDeWael over 4 years ago - 1 comment
Labels: enhancement