Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mica-mni/micapipe issues and pull requests

#100 - realpath No such file or directory

Issue - State: closed - Opened by BrianYahoo over 1 year ago - 1 comment
Labels: help wanted

#100 - realpath No such file or directory

Issue - State: closed - Opened by BrianYahoo over 1 year ago - 1 comment
Labels: help wanted

#99 - ERROR ]..... B0 threshold is not a valid integrer: DEFAULT

Issue - State: closed - Opened by hoptman over 1 year ago - 3 comments
Labels: help wanted

#99 - ERROR ]..... B0 threshold is not a valid integrer: DEFAULT

Issue - State: closed - Opened by hoptman over 1 year ago - 3 comments
Labels: help wanted

#98 - volumetric tSNR calcs

Pull Request - State: closed - Opened by jordandekraker over 1 year ago - 1 comment

#98 - volumetric tSNR calcs

Pull Request - State: closed - Opened by jordandekraker over 1 year ago - 1 comment

#97 - Volumetric tSRN

Issue - State: closed - Opened by jordandekraker over 1 year ago - 1 comment
Labels: enhancement

#97 - Volumetric tSRN

Issue - State: closed - Opened by jordandekraker over 1 year ago - 1 comment
Labels: enhancement

#96 - Running micapipe after docker pull

Issue - State: closed - Opened by LPNC-LANG over 1 year ago - 15 comments
Labels: help wanted

#96 - Running micapipe after docker pull

Issue - State: closed - Opened by LPNC-LANG over 1 year ago - 15 comments
Labels: help wanted

#95 - FastSurfer tries to run singularity w/in containerized call and fails

Issue - State: closed - Opened by bcmcpher over 1 year ago - 4 comments

#95 - FastSurfer tries to run singularity w/in containerized call and fails

Issue - State: closed - Opened by bcmcpher over 1 year ago - 4 comments

#94 - Warning message

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#94 - Warning message

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#93 - QC_subj terminates early without all outputs

Issue - State: closed - Opened by araikes over 1 year ago - 3 comments
Labels: help wanted, question

#93 - QC_subj terminates early without all outputs

Issue - State: closed - Opened by araikes over 1 year ago - 3 comments
Labels: help wanted, question

#92 - Loading prerun fastsurfer

Issue - State: closed - Opened by araikes over 1 year ago - 2 comments

#92 - Loading prerun fastsurfer

Issue - State: closed - Opened by araikes over 1 year ago - 2 comments

#91 - Issue in set-up

Issue - State: closed - Opened by marcellamontagnese over 1 year ago - 11 comments
Labels: help wanted

#91 - Issue in set-up

Issue - State: closed - Opened by marcellamontagnese over 1 year ago - 11 comments
Labels: help wanted

#90 - Mismatch between "dependencies" and software versions

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#90 - Mismatch between "dependencies" and software versions

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#89 - Fastsurfer not running in containerized micapipe v0.2.2

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#89 - Fastsurfer not running in containerized micapipe v0.2.2

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#88 - -QC_subj does not produce QC report for dwi due to outdated json path

Issue - State: closed - Opened by ajschadler12 over 1 year ago - 1 comment

#88 - -QC_subj does not produce QC report for dwi due to outdated json path

Issue - State: closed - Opened by ajschadler12 over 1 year ago - 1 comment

#87 - -force flag on proc_dwi deletes proc_structural through post_structural output

Issue - State: closed - Opened by ajschadler12 over 1 year ago - 1 comment
Labels: enhancement, help wanted

#87 - -force flag on proc_dwi deletes proc_structural through post_structural output

Issue - State: closed - Opened by ajschadler12 over 1 year ago - 1 comment
Labels: enhancement, help wanted

#86 - touch-ups to make things cleaner

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#86 - touch-ups to make things cleaner

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#85 - Revert "equipotential surfaces through WM"

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#85 - Revert "equipotential surfaces through WM"

Pull Request - State: closed - Opened by jordandekraker over 1 year ago

#84 - equipotential surfaces through WM

Pull Request - State: closed - Opened by jordandekraker over 1 year ago - 1 comment

#84 - equipotential surfaces through WM

Pull Request - State: closed - Opened by jordandekraker over 1 year ago - 1 comment

#83 - Faild using docker pull for install.

Issue - State: closed - Opened by ZhyGao over 1 year ago - 1 comment

#83 - Faild using docker pull for install.

Issue - State: closed - Opened by ZhyGao over 1 year ago - 1 comment

#82 - -SC does not produce connectome text files

Issue - State: closed - Opened by araikes over 1 year ago - 3 comments

#82 - -SC does not produce connectome text files

Issue - State: closed - Opened by araikes over 1 year ago - 3 comments

#81 - -QC fails

Issue - State: closed - Opened by araikes over 1 year ago - 5 comments

#81 - -QC fails

Issue - State: closed - Opened by araikes over 1 year ago - 5 comments

#80 - autoTracts bundled with SC fails

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#80 - autoTracts bundled with SC fails

Issue - State: closed - Opened by araikes over 1 year ago - 1 comment

#77 - Unable to pull version 0.2.0 from docker

Issue - State: closed - Opened by AdamPariag over 1 year ago - 3 comments

#77 - Unable to pull version 0.2.0 from docker

Issue - State: closed - Opened by AdamPariag over 1 year ago - 3 comments

#76 - $dwi_dns undefined

Issue - State: closed - Opened by MarkNelson86 almost 2 years ago - 2 comments

#76 - $dwi_dns undefined

Issue - State: closed - Opened by MarkNelson86 almost 2 years ago - 2 comments

#75 - micapipe_check_dependency command not found

Issue - State: closed - Opened by MarkNelson86 almost 2 years ago - 2 comments

#75 - micapipe_check_dependency command not found

Issue - State: closed - Opened by MarkNelson86 almost 2 years ago - 2 comments

#74 - removes extra output file

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#74 - removes extra output file

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#73 - patch for aparc-a2009s and general robustness

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#73 - patch for aparc-a2009s and general robustness

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#72 - another missing label file

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#72 - another missing label file

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#71 - Func surf patch

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#71 - Func surf patch

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#70 - added support for aparc-a2009s FC

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#70 - added support for aparc-a2009s FC

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#69 - func sampling on fsLR

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago - 3 comments

#69 - func sampling on fsLR

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago - 3 comments

#68 - Dev surfmaps

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#68 - Dev surfmaps

Pull Request - State: closed - Opened by jordandekraker almost 2 years ago

#67 - Fix missing file paths in 02_proc-dwi and 03_SC

Pull Request - State: closed - Opened by araikes almost 2 years ago - 1 comment

#67 - Fix missing file paths in 02_proc-dwi and 03_SC

Pull Request - State: closed - Opened by araikes almost 2 years ago - 1 comment

#66 - Alternative phase encoding schemes

Issue - State: closed - Opened by araikes almost 2 years ago - 2 comments

#66 - Alternative phase encoding schemes

Issue - State: closed - Opened by araikes almost 2 years ago - 2 comments

#65 - Final LUT Entry for Schaefer 1000?

Issue - State: closed - Opened by benjaminsipes almost 2 years ago - 2 comments

#65 - Final LUT Entry for Schaefer 1000?

Issue - State: closed - Opened by benjaminsipes almost 2 years ago - 2 comments

#64 - Bug: mrdegibbs (and dwifslpreproc later) fails in 0.1.5

Issue - State: closed - Opened by araikes almost 2 years ago - 3 comments

#64 - Bug: mrdegibbs (and dwifslpreproc later) fails in 0.1.5

Issue - State: closed - Opened by araikes almost 2 years ago - 3 comments

#63 - update Dockerfile

Pull Request - State: closed - Opened by PeerHerholz almost 2 years ago

#63 - update Dockerfile

Pull Request - State: closed - Opened by PeerHerholz almost 2 years ago

#62 - Include option to disable bvalue scaling

Issue - State: closed - Opened by ajschadler12 about 2 years ago - 4 comments

#62 - Include option to disable bvalue scaling

Issue - State: closed - Opened by ajschadler12 about 2 years ago - 4 comments

#61 - T1w and T2w suffixes

Issue - State: closed - Opened by jordandekraker about 2 years ago - 1 comment

#61 - T1w and T2w suffixes

Issue - State: closed - Opened by jordandekraker about 2 years ago - 1 comment

#60 - Add a CI workflow to run tests and and test the docker build regularly

Issue - State: open - Opened by Remi-Gau about 2 years ago - 1 comment

#60 - Add a CI workflow to run tests and and test the docker build regularly

Issue - State: open - Opened by Remi-Gau about 2 years ago - 1 comment

#59 - building micapipe in docker on MacOS M1

Issue - State: closed - Opened by slusna-dominika about 2 years ago - 1 comment

#59 - building micapipe in docker on MacOS M1

Issue - State: closed - Opened by slusna-dominika about 2 years ago - 1 comment

#58 - Cannot persuade version 0.1.4 to run proc_structural

Issue - State: closed - Opened by araikes about 2 years ago - 6 comments

#58 - Cannot persuade version 0.1.4 to run proc_structural

Issue - State: closed - Opened by araikes about 2 years ago - 6 comments

#57 - Rerun `-proc_dwi` with `-autotract`, fails because TCK is not regenerated.

Issue - State: closed - Opened by ajschadler12 over 2 years ago - 1 comment

#57 - Rerun `-proc_dwi` with `-autotract`, fails because TCK is not regenerated.

Issue - State: closed - Opened by ajschadler12 over 2 years ago - 1 comment

#56 - res-fMRI FC - missing ROI

Issue - State: closed - Opened by Liz-Yuanxi-Lee over 2 years ago - 1 comment

#56 - res-fMRI FC - missing ROI

Issue - State: closed - Opened by Liz-Yuanxi-Lee over 2 years ago - 1 comment

#55 - Results from auto_tract

Issue - State: closed - Opened by HEEHWANWANG over 2 years ago - 2 comments

#55 - Results from auto_tract

Issue - State: closed - Opened by HEEHWANWANG over 2 years ago - 2 comments

#54 - Incorporate FastSurfer

Issue - State: closed - Opened by thomshaw92 over 2 years ago - 2 comments

#54 - Incorporate FastSurfer

Issue - State: closed - Opened by thomshaw92 over 2 years ago - 2 comments

#53 - ReadTheDocs Singularity issues/errors

Issue - State: closed - Opened by thomshaw92 over 2 years ago - 1 comment

#53 - ReadTheDocs Singularity issues/errors

Issue - State: closed - Opened by thomshaw92 over 2 years ago - 1 comment

#52 - MPC surface ordering distorted

Issue - State: closed - Opened by rb643 over 2 years ago - 3 comments

#52 - MPC surface ordering distorted

Issue - State: closed - Opened by rb643 over 2 years ago - 3 comments

#51 - From rsfMRI to nativepro space

Pull Request - State: closed - Opened by jordandekraker over 2 years ago

#51 - From rsfMRI to nativepro space

Pull Request - State: closed - Opened by jordandekraker over 2 years ago