mianalysis/mia issues and pull requests

#193 - Develop

Pull Request - State: closed - Opened by sjcross 4 months ago

#192 - Develop

Pull Request - State: closed - Opened by sjcross 4 months ago

#191 - Moving to v1.6.0

Pull Request - State: closed - Opened by sjcross 5 months ago

#106 - Convert measurements to global variables

Issue - State: closed - Opened by sjcross over 4 years ago - 2 comments
Labels: enhancement, GUI

#100 - Automatic inclusion of ImageJ PluginFilter

Issue - State: open - Opened by sjcross about 5 years ago - 1 comment
Labels: enhancement

#99 - Texture measurement with local radius

Issue - State: closed - Opened by alibhaid about 5 years ago - 1 comment
Labels: bug

#98 - Parallelise Hough transform

Issue - State: closed - Opened by sjcross about 5 years ago - 1 comment
Labels: enhancement

#97 - Separate classes for BinaryOperations2D

Issue - State: open - Opened by sjcross about 5 years ago - 1 comment
Labels: enhancement

#96 - FillHoles should check if 2D

Issue - State: open - Opened by sjcross about 5 years ago - 1 comment
Labels: enhancement

#95 - Implement octree structure for coordinates

Issue - State: closed - Opened by sjcross over 5 years ago - 2 comments
Labels: enhancement

#94 - Inconsistency in ResolveObjectCoOccurrence

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: bug

#93 - SetLUT doesn't work for 32-bit images

Issue - State: closed - Opened by sjcross over 5 years ago
Labels: bug

#92 - Manual range for LUT

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: enhancement

#91 - Store focus points in manual BestFocusSubstack as metadata

Issue - State: closed - Opened by sjcross over 5 years ago - 4 comments
Labels: enhancement

#90 - SaveImages mirrored directory and specific folder don't work

Issue - State: closed - Opened by sjcross over 5 years ago
Labels: bug

#89 - Improve different location saving

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: enhancement

#88 - Hough transform accumulator showing

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: bug

#87 - Incorrect number of active modules

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: bug, GUI

#86 - Skip an image in Concantenate if not present

Issue - State: closed - Opened by sjcross over 5 years ago

#85 - Autoloading images from InputControl

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: enhancement

#84 - Parallelise FitGaussian2D

Issue - State: open - Opened by sjcross over 5 years ago
Labels: enhancement

#83 - Unwarp images only works for 8-bit images

Issue - State: open - Opened by sjcross over 5 years ago - 1 comment
Labels: bug

#82 - Tracking confidence

Issue - State: open - Opened by sjcross over 5 years ago
Labels: enhancement

#81 - Set up Github Pages

Issue - State: closed - Opened by sjcross over 5 years ago - 2 comments
Labels: documentation

#80 - Logo!

Issue - State: closed - Opened by sjcross over 5 years ago - 2 comments
Labels: documentation

#79 - Add multiple images to MergeImages

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: enhancement

#78 - Add .mia filename to output files

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: enhancement

#77 - Multithread AddObjectsOverlay

Issue - State: closed - Opened by sjcross over 5 years ago
Labels: enhancement

#76 - Interval for ImageLoader image sequence

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: enhancement

#75 - Progress bar incorrect for single file multi series

Issue - State: closed - Opened by sjcross over 5 years ago - 1 comment
Labels: bug

#74 - AnalysisTester not checking measurements

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug

#73 - Prevent writing over Excel or output images

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment

#72 - Make file filters more generic

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#71 - Don't show calibration error when using manual calibration

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#70 - Convert Parameter and Measurement interfaces to enum

Issue - State: closed - Opened by sjcross almost 6 years ago - 2 comments

#69 - Object exporting

Issue - State: closed - Opened by sjcross almost 6 years ago - 2 comments
Labels: enhancement

#68 - ProjectObjects doesn't have showOutput

Issue - State: closed - Opened by sjcross almost 6 years ago
Labels: show output

#67 - Add global on/off to Excel export

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#66 - Excel file overwrite warning

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug, enhancement

#65 - Select which metadata items should be exported

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#64 - Create Image and Obj reference objects

Issue - State: closed - Opened by sjcross almost 6 years ago - 2 comments
Labels: enhancement

#63 - Line ROI warning on ManuallySelectObjects

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement, GUI

#62 - Adding removed objects to Exporter

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug

#61 - Problem with RemoveImage

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug

#60 - Image properties output

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#59 - Key for module status

Issue - State: open - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#58 - Problem with MergeObjects

Issue - State: open - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug

#57 - Basic GUI showing disabled modules

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug, GUI

#56 - Add generic regex metadata extraction

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#55 - Skip module if parameters are missing

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#54 - Spatial calibration lost in FocusStack

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug

#53 - ConvertObjectsToImage progress

Issue - State: closed - Opened by sjcross almost 6 years ago - 2 comments
Labels: bug

#52 - Output filenames not working on OSX

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug, OSX compatibility

#51 - Automatically ignore "._" files

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug, OSX compatibility

#50 - View button doesn't work on OSX

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug, OSX compatibility, GUI

#49 - Better output measurement control

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: enhancement

#48 - BinaryOperations erode should be inverted dilate

Issue - State: closed - Opened by sjcross almost 6 years ago

#47 - ManuallyIdentifyObjects doesn't work with time

Issue - State: closed - Opened by sjcross almost 6 years ago
Labels: bug

#46 - TrackObjects

Issue - State: closed - Opened by sjcross almost 6 years ago
Labels: show output

#45 - ManuallyIdentifyObjects use line width

Issue - State: closed - Opened by sjcross almost 6 years ago - 1 comment
Labels: bug

#44 - ManuallyIdentifyObjects

Issue - State: closed - Opened by sjcross almost 6 years ago
Labels: show output

#43 - Add multiple criteria for filter objects

Issue - State: closed - Opened by sjcross about 6 years ago - 1 comment
Labels: enhancement

#42 - FitEllipse still gives singularity error

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: bug

#41 - ExtendedMinima doesn't work with 32-bit images

Issue - State: closed - Opened by sjcross about 6 years ago - 2 comments
Labels: bug

#40 - HoughObjectDetection

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: show output

#39 - ObjectClusterer

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: show output

#38 - Status bar doesn't appear to be working

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: bug, GUI

#37 - Load image sequence from non-zero indices

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: bug

#36 - Expand and shrink objects

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: show output

#35 - ImageLoader's specific file should ignore InputControl series number

Issue - State: closed - Opened by sjcross about 6 years ago - 1 comment
Labels: bug

#34 - Filter objects

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: show output

#33 - Image type converter

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: show output

#32 - Merge objects

Issue - State: closed - Opened by sjcross about 6 years ago
Labels: show output

#31 - Move away from reference images

Issue - State: closed - Opened by sjcross about 6 years ago - 2 comments
Labels: enhancement

#30 - Drop down menu buttons

Issue - State: closed - Opened by sjcross about 6 years ago - 1 comment
Labels: bug, OSX compatibility, GUI

#29 - Image save location on OSX

Issue - State: closed - Opened by sjcross about 6 years ago - 1 comment
Labels: OSX compatibility

#28 - Overlay not showing up on composite image

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#27 - AddObjectOverlay fails when object outside Z-range

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: bug

#26 - Progress bar along bottom of GUI

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: enhancement

#25 - Gaussfit2D not applying spatial calibration

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#24 - Minimise direction changes in TrackObjects

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: enhancement

#23 - GUI looks ugly on OSX

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug, OSX compatibility

#22 - Add threshold as measurement to image

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: enhancement

#21 - Get local object region is very slow

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#20 - Positions from TrackMate appear off by 1

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#19 - Numbers in ImageJ console

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#18 - Add global parameter variables

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: enhancement

#17 - Add basic plotting tool

Issue - State: open - Opened by sjcross over 6 years ago - 4 comments
Labels: enhancement, GUI

#16 - Image type converter normalise not working for 8 bit

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: bug

#15 - Handle results writing when file is open

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: enhancement

#14 - Add calibrated radius to RunTrackMate

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: enhancement

#13 - Expand objects 2D

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#12 - Sigma range in 2D Gaussian fit doesn't appear to work

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: bug

#11 - Collapse sections on basic GUI

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: enhancement, GUI

#10 - Read LUT upon file loading

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: enhancement

#9 - Output values from MeasureTrackMotion in calibrated units

Issue - State: closed - Opened by sjcross over 6 years ago
Labels: enhancement

#8 - Remove "Continuous data export" as an option from OutputControl

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: invalid

#7 - Add frame number as object measurement option

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: enhancement

#6 - NoSuchMethodError at Exporter line 321

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: bug

#5 - Add spot intensity measurements to input objects

Issue - State: closed - Opened by sjcross over 6 years ago - 1 comment
Labels: bug

GitHub / mianalysis/mia issues and pull requests