Ecosyste.ms: Issues

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GitHub / mhhennig/HS2 issues and pull requests

#80 - Parameter equivalence between HSDetection and Lightning

Issue - State: open - Opened by b-grimaud 7 months ago - 2 comments

#79 - more msvc fun

Pull Request - State: closed - Opened by mhhennig 7 months ago

#78 - Missing `expinds` attribute in `HSClustering`

Issue - State: closed - Opened by b-grimaud 7 months ago - 1 comment

#77 - Error running demo_lightning_simulated on win10

Issue - State: closed - Opened by GrimmSnark 7 months ago - 3 comments

#76 - Failed to build installable wheels error

Issue - State: closed - Opened by AbhiSwamiUConn 7 months ago - 8 comments

#75 - SpikeInterface CMR vs integrated CMR

Issue - State: closed - Opened by b-grimaud 7 months ago - 2 comments

#74 - Lightning

Pull Request - State: closed - Opened by mhhennig 7 months ago

#73 - Fix relative imports, slightly better BRW v4.x support

Pull Request - State: closed - Opened by b-grimaud about 1 year ago - 1 comment

#72 - HS2 fails to build with Build Tools 2022

Issue - State: closed - Opened by marvinseifert about 1 year ago - 1 comment

#71 - Issue using tutorial jupyter notebook (localised_spikes_clustered-biocam)

Issue - State: closed - Opened by GrimmSnark over 1 year ago - 2 comments

#70 - HerdingSpike through SpikeInterface wrongly scales waveform.

Issue - State: closed - Opened by BptGrm almost 2 years ago - 1 comment

#69 - Build fails on Windows 10

Issue - State: closed - Opened by BptGrm almost 2 years ago - 3 comments

#68 - Kernel died when using herdingspikes in SpikeInterface

Issue - State: closed - Opened by betty6you over 2 years ago - 2 comments

#67 - HS on Spike Interface

Issue - State: closed - Opened by Zoe0793 over 2 years ago - 1 comment

#66 - Read BRW v4.x files

Pull Request - State: closed - Opened by BptGrm over 2 years ago - 1 comment

#65 - Trouble running HS on Spikeinterface

Issue - State: closed - Opened by nasnass over 2 years ago - 5 comments

#64 - Cant run herdingspikes

Issue - State: closed - Opened by franciscomiqueles over 2 years ago - 3 comments

#63 - create_probe_files leading to write OSError

Issue - State: closed - Opened by chyumin over 2 years ago - 3 comments

#62 - Fixes

Pull Request - State: closed - Opened by lkct over 2 years ago

#61 - Localization difference between BioCam and RecordingExtractor objects

Issue - State: closed - Opened by BptGrm over 2 years ago - 4 comments

#60 - use os.path.join instead of +

Pull Request - State: closed - Opened by lkct over 2 years ago

#59 - bug with the 0.3.7 version

Issue - State: closed - Opened by benkiisma almost 3 years ago - 2 comments

#58 - Version 0.3.100 fails at import

Issue - State: closed - Opened by alejoe91 almost 3 years ago - 3 comments

#56 - version 0.3.99 fails at importing probe utils

Issue - State: closed - Opened by alejoe91 over 3 years ago - 1 comment

#55 - Run `HS2` without probe file

Issue - State: closed - Opened by marcoistasy over 3 years ago - 2 comments

#54 - Update to SI>=0.90

Pull Request - State: closed - Opened by alejoe91 over 3 years ago - 3 comments

#53 - bug with HS 0.3.7

Issue - State: closed - Opened by samuelgarcia over 3 years ago - 2 comments

#52 - clustering using DBSCAN

Issue - State: open - Opened by marvinseifert about 4 years ago - 1 comment

#51 - Nm 58

Pull Request - State: closed - Opened by ksanchez15 over 4 years ago

#50 - Nm 58

Pull Request - State: closed - Opened by ksanchez15 over 4 years ago

#49 - Version in __version__

Issue - State: closed - Opened by samuelgarcia about 5 years ago - 7 comments

#48 - Detection state is saving the wrong cutout_length

Issue - State: closed - Opened by frozenblit over 5 years ago

#47 - Added version and commit information

Pull Request - State: closed - Opened by frozenblit over 5 years ago - 2 comments

#46 - Setup experiments

Pull Request - State: closed - Opened by martinosorb over 5 years ago

#45 - Added py3.4 requirement and precompiled cpp for all versions

Pull Request - State: closed - Opened by martinosorb over 5 years ago

#44 - Use an optional environment variable 'HS2_PROBE_PATH' to write probe files

Pull Request - State: closed - Opened by jamesjun almost 6 years ago

#42 - Paramter units

Pull Request - State: closed - Opened by colehurwitz almost 6 years ago - 1 comment

#41 - Compatibility with recording ectractor channel

Pull Request - State: closed - Opened by alejoe91 almost 6 years ago - 1 comment

#40 - MEArec probe added

Pull Request - State: closed - Opened by mhhennig almost 6 years ago

#39 - Save the version info in output files

Issue - State: closed - Opened by mhhennig almost 6 years ago - 1 comment
Labels: enhancement

#38 - MEA1K: Read channel info from data file

Pull Request - State: closed - Opened by mhhennig about 6 years ago

#37 - Data lost at end of files

Issue - State: closed - Opened by mhhennig over 6 years ago - 1 comment
Labels: bug

#36 - Installation Issue (Windows)

Issue - State: closed - Opened by obaiam11 over 6 years ago - 7 comments

#35 - Store sampling rate in .bin file

Issue - State: closed - Opened by mhhennig over 6 years ago
Labels: enhancement

#34 - fixed another tiny bug

Pull Request - State: closed - Opened by mhhennig over 6 years ago - 1 comment

#33 - Save more relevant information in the .bin files

Issue - State: closed - Opened by mhhennig over 6 years ago
Labels: enhancement

#32 - Speed up post-clustering processing

Issue - State: closed - Opened by mhhennig over 6 years ago - 4 comments
Labels: enhancement

#31 - Re-implement filter methods

Issue - State: closed - Opened by mhhennig over 6 years ago
Labels: enhancement

#30 - Localisation incorrect on borders on arrays with wide aspect ratio

Issue - State: closed - Opened by mhhennig over 6 years ago - 5 comments
Labels: wontfix

#29 - Set up proper module

Issue - State: closed - Opened by martinosorb over 6 years ago - 1 comment
Labels: enhancement

#28 - Remove stale branches

Issue - State: closed - Opened by martinosorb over 6 years ago - 4 comments
Labels: question

#27 - Review example notebooks

Issue - State: closed - Opened by martinosorb over 6 years ago - 10 comments

#26 - PlotTracesChannels still fails for MEA1K

Issue - State: closed - Opened by martinosorb over 6 years ago - 2 comments
Labels: bug

#25 - Detection doesn't raise error when file doesn't exist

Issue - State: closed - Opened by martinosorb over 6 years ago
Labels: bug

#24 - Probe testing

Pull Request - State: closed - Opened by mhhennig almost 7 years ago

#23 - Set detection parameter in units of ms, not in sample bins

Issue - State: closed - Opened by mhhennig almost 7 years ago
Labels: enhancement

#22 - Parameter optimisation via Bayesian Optimisation

Pull Request - State: closed - Opened by JanoHorvath almost 7 years ago
Labels: enhancement

#21 - add sampling rate to hdf5 files

Issue - State: closed - Opened by mhhennig almost 7 years ago - 2 comments

#20 - Finish writing save functions of Clustering class

Issue - State: closed - Opened by martinosorb almost 7 years ago - 1 comment

#19 - DBSCAN problems

Issue - State: closed - Opened by martinosorb almost 7 years ago - 2 comments

#18 - Probe should provide units of voltage.

Issue - State: closed - Opened by martinosorb almost 7 years ago - 2 comments
Labels: enhancement

#17 - Refactored CombinedClustering

Pull Request - State: closed - Opened by JanoHorvath almost 7 years ago - 1 comment
Labels: enhancement

#15 - hs2.LoadDetected() crashes when no spikes were detected

Issue - State: closed - Opened by JanoHorvath almost 7 years ago - 4 comments
Labels: bug

#14 - Spikes are sometimes localised to negative coordinates

Issue - State: closed - Opened by JanoHorvath almost 7 years ago - 1 comment
Labels: bug

#13 - reading multiple files

Issue - State: closed - Opened by mhhennig about 7 years ago - 1 comment

#12 - Bug: PlotTracesChannel breaks with smallest event numbers

Issue - State: closed - Opened by colehurwitz about 7 years ago - 3 comments
Labels: bug

#11 - theoretical foundations for clustering

Issue - State: closed - Opened by mhhennig about 7 years ago - 4 comments
Labels: foundations

#10 - Some small potential improvements for usability

Issue - State: closed - Opened by mhhennig about 7 years ago - 14 comments

#9 - Make LoadDetected() compatible with Python2

Pull Request - State: closed - Opened by frozenblit over 7 years ago

#8 - Validation Ideas for our Spike Sorting

Issue - State: closed - Opened by colehurwitz over 7 years ago - 2 comments
Labels: help wanted, foundations

#7 - Martino+cole

Pull Request - State: closed - Opened by mhhennig over 7 years ago

#6 - Come up with better localization algorithm

Issue - State: closed - Opened by colehurwitz over 7 years ago - 1 comment
Labels: help wanted, foundations

#5 - Inconsistent way of passing probe geometry

Issue - State: closed - Opened by martinosorb over 7 years ago - 2 comments

#4 - Create NeuralProbe class and create subclasses for probes we already know.

Issue - State: closed - Opened by colehurwitz over 7 years ago - 1 comment
Labels: enhancement

#3 - Come up with a name for our Python class that the user will use in biocam branch

Issue - State: closed - Opened by colehurwitz over 7 years ago - 3 comments
Labels: enhancement

#2 - Create Python class to run all of our current code and visualize data in biocam branch

Issue - State: closed - Opened by colehurwitz over 7 years ago
Labels: enhancement

#1 - Explore how to write to hdf5 file in c++ and how to write out many spikes at once in biocam branch

Issue - State: closed - Opened by colehurwitz over 7 years ago - 1 comment
Labels: enhancement, help wanted