metageni/SUPER-FOCUS issues and pull requests

#90 - returning results/binning reads for an empty file

Pull Request - State: open - Opened by linsalrob 21 days ago

#89 - Docker image for singularity

Pull Request - State: closed - Opened by linsalrob 21 days ago

#88 - Error in formating databases

Issue - State: open - Opened by Felipe-Alexandre 8 months ago - 3 comments

#87 - Updating filepaths

Pull Request - State: closed - Opened by linsalrob 9 months ago

#86 - Databases not available anymore for download

Issue - State: closed - Opened by jbaer7 9 months ago - 1 comment

#85 - output

Issue - State: open - Opened by wittney-m 11 months ago - 1 comment

#84 - database issue

Issue - State: closed - Opened by wittney-m 12 months ago - 4 comments

#83 - Could not concatenate clusters at level 90

Issue - State: closed - Opened by wittney-m 12 months ago - 3 comments

#82 - diamond v2.0.xx

Issue - State: closed - Opened by bcpd almost 2 years ago - 3 comments

#81 - Can´t download databases

Issue - State: closed - Opened by JennsiS almost 2 years ago - 5 comments

#80 - subsample data

Pull Request - State: closed - Opened by linsalrob over 2 years ago

#79 - non null alternative db

Pull Request - State: closed - Opened by metageni over 2 years ago

#78 - can't download database

Issue - State: closed - Opened by ncanaless over 2 years ago - 9 comments

#77 - Include mmseqs2

Pull Request - State: closed - Opened by linsalrob almost 3 years ago
Labels: enhancement

#76 - version doesn't work

Issue - State: closed - Opened by linsalrob almost 3 years ago - 4 comments

#75 - Allow multiple separate fastq queries

Pull Request - State: closed - Opened by linsalrob almost 3 years ago - 1 comment

#74 - Conda install does not properly bundle db dir

Issue - State: closed - Opened by boulund almost 3 years ago - 2 comments

#73 - Add --db-dir argument to downloadDB script

Pull Request - State: closed - Opened by boulund almost 3 years ago - 16 comments

#72 - Using diamond with SUPER-FOCUS

Pull Request - State: closed - Opened by linsalrob almost 3 years ago

#71 - use uuid to create tmp dir

Pull Request - State: closed - Opened by metageni almost 3 years ago

#70 - Use environment variable for db

Pull Request - State: closed - Opened by linsalrob about 3 years ago - 1 comment

#69 - single-file query no longer working?

Issue - State: closed - Opened by ModelMEMS over 3 years ago - 1 comment

#68 - superfocus_downloadDB: Error opening database file

Issue - State: closed - Opened by ModelMEMS over 3 years ago - 9 comments

#67 - conda install can't find database_PKs.txt

Issue - State: closed - Opened by linsalrob about 4 years ago

#66 - smaller downloadDBs

Issue - State: closed - Opened by linsalrob about 4 years ago - 13 comments

#65 - superfocus_downloadDB

Issue - State: closed - Opened by linsalrob about 4 years ago

#64 - Functional abundance and discrepancy between Subsystem 2 and 3

Issue - State: closed - Opened by bishav6708 about 4 years ago - 3 comments

#63 - fix UTF-8 error

Pull Request - State: closed - Opened by metageni over 4 years ago

#62 - Non UTF-8 characters in the your database creating parsing errors

Issue - State: closed - Opened by carden24 over 4 years ago - 4 comments

#61 - Please, help => ValueError: not enough values to unpack (expected 2, got 0)

Issue - State: closed - Opened by chulghim over 4 years ago - 1 comment

#60 - increase field_size_limit

Pull Request - State: closed - Opened by metageni over 4 years ago

#59 - _csv.Error: field larger than field limit (131072)

Issue - State: closed - Opened by s4251484 over 4 years ago - 3 comments

#58 - "FOCUS is not avaliable on this version"

Issue - State: closed - Opened by cbjurnemark over 4 years ago - 4 comments

#57 - superfocus_downloadDB -i is required

Issue - State: closed - Opened by linsalrob over 4 years ago - 1 comment

#56 - Description on functional profiles

Issue - State: closed - Opened by bishav6708 over 4 years ago - 1 comment

#55 - fix diamond

Pull Request - State: closed - Opened by metageni almost 5 years ago

#54 - amino acid sequences

Issue - State: closed - Opened by lidpeck almost 5 years ago - 10 comments

#53 - not enough values to unpack error

Issue - State: closed - Opened by bcpd almost 5 years ago - 5 comments

#52 - Superfocus normalization?

Issue - State: closed - Opened by Thomieh73 almost 5 years ago - 2 comments

#51 - Issues with Excel-based output

Issue - State: closed - Opened by ctseto over 5 years ago - 2 comments

#50 - rapsearch database cannot open

Issue - State: closed - Opened by s4251484 over 5 years ago - 2 comments

#49 - IsADirectoryError: [Errno 21] Is a directory: '/home/mdimdadi/14777R/FastQ/Passed_Reads/14777x5/5_superfocus_output'

Issue - State: closed - Opened by mdimdadi over 5 years ago - 11 comments

#48 - [new release - features] SUPER-FOCUS 0.37

Issue - State: closed - Opened by metageni over 5 years ago

#47 - [feature] change -n 0/1 to only -n using `action='store_true'`

Issue - State: closed - Opened by metageni over 5 years ago