Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mesoscope/cellpack issues and pull requests

#297 - ci(dependabot): bump actions/checkout from 2.3.1 to 4.2.2

Pull Request - State: closed - Opened by dependabot[bot] 16 days ago - 1 comment
Labels: dependencies, github_actions

#296 - Add `batch_job_id` to result metadata

Issue - State: open - Opened by rugeli 19 days ago

#295 - add `batch_job_id` to result metadata

Pull Request - State: closed - Opened by rugeli 19 days ago - 1 comment

#294 - Remove conda

Pull Request - State: open - Opened by mogres about 1 month ago - 1 comment

#293 - Migrate from `setup.py` to `pyproject.toml` using PDM

Issue - State: open - Opened by rugeli about 1 month ago - 1 comment
Labels: enhancement

#292 - Fix action authentication error: add a new PAT to dependabot secrets

Pull Request - State: closed - Opened by rugeli about 2 months ago - 1 comment

#291 - Update black requirement from <=23.0,>=19.10b0 to >=19.10b0,<=24.8.0 in the pip group across 1 directory

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 4 comments
Labels: dependencies, python

#290 - ci(dependabot): bump JamesIves/github-pages-deploy-action from 3.7.1 to 4.6.8

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 2 comments
Labels: dependencies, github_actions

#288 - Specify Output .simularium File Name

Issue - State: open - Opened by ascibisz about 2 months ago

#287 - API Gateway for Cellpack Server

Issue - State: open - Opened by ascibisz about 2 months ago

#286 - add script for triggering remote job, reading logs, and opening simul…

Pull Request - State: open - Opened by ascibisz 3 months ago - 1 comment

#285 - Feature/pass recipe to docker

Pull Request - State: open - Opened by ascibisz 3 months ago - 1 comment

#284 - Trigger AWS Batch Job Remotely

Issue - State: closed - Opened by ascibisz 3 months ago - 1 comment

#283 - Pass Recipe and Config into Docker Container

Issue - State: open - Opened by ascibisz 3 months ago

#281 - Update workflow to access aws for dependabot

Pull Request - State: closed - Opened by rugeli 3 months ago - 1 comment

#280 - Feature/aws cli in docker

Pull Request - State: closed - Opened by rugeli 4 months ago - 1 comment

#279 - Access S3 bucket in docker container

Issue - State: closed - Opened by rugeli 4 months ago

#278 - ci(dependabot): bump JamesIves/github-pages-deploy-action from 3.7.1 to 4.6.3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 6 comments
Labels: dependencies, github_actions

#277 - Test issue

Issue - State: closed - Opened by rugeli 4 months ago - 1 comment

#276 - Feature/markdown class

Pull Request - State: closed - Opened by rugeli 4 months ago - 2 comments

#275 - Feature/support gradient arrays in firebase

Pull Request - State: closed - Opened by rugeli 4 months ago - 1 comment

#274 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies, github_actions

#272 - Github actions: Error in `Add Issues to Project`

Issue - State: closed - Opened by rugeli 5 months ago - 1 comment

#271 - Specify weights while combining gradients

Pull Request - State: closed - Opened by mogres 5 months ago - 1 comment

#270 - Use multiple gradients on a single ingredient

Pull Request - State: closed - Opened by mogres 5 months ago - 2 comments
Labels: enhancement

#269 - Firebase uploader refactor: update multiple compositions in the same region

Pull Request - State: closed - Opened by rugeli 5 months ago - 1 comment

#268 - Adding `grid_file_path` to recipe metadata for uploads

Pull Request - State: closed - Opened by rugeli 5 months ago - 1 comment

#267 - Refactor: load from s3

Pull Request - State: closed - Opened by rugeli 5 months ago - 2 comments

#266 - Upload grid file path to firebase on upload

Issue - State: closed - Opened by rugeli 5 months ago

#264 - Put cellPACK on a server

Issue - State: open - Opened by meganrm 5 months ago - 1 comment

#263 - Text debt/maintenance on cellPack analysis repo.

Issue - State: closed - Opened by meganrm 5 months ago - 2 comments

#262 - Combine multiple gradients on a single ingredient

Issue - State: closed - Opened by meganrm 5 months ago - 1 comment

#261 - ci(dependabot): bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#260 - ci(dependabot): bump actions/add-to-project from 0.5.0 to 1.0.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#259 - ci(dependabot): bump iterative/setup-cml from 1 to 3

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#258 - ci(dependabot): bump JamesIves/github-pages-deploy-action from 3.7.1 to 4.6.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#257 - ci(dependabot): bump actions/checkout from 2.3.1 to 4.1.6

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#256 - Load grid from URL

Pull Request - State: closed - Opened by mogres 6 months ago - 1 comment

#255 - Feature/add plots to result

Pull Request - State: closed - Opened by rugeli 6 months ago - 2 comments

#254 - Adding plots to result file

Issue - State: closed - Opened by rugeli 6 months ago

#253 - Load grid files from URL

Issue - State: closed - Opened by mogres 6 months ago
Labels: enhancement, dataflow

#252 - Remove pyembree

Pull Request - State: closed - Opened by mogres 6 months ago - 1 comment

#251 - Remove pyembree dependency

Issue - State: closed - Opened by mogres 6 months ago

#250 - Cache pip dependencies in github actions

Pull Request - State: closed - Opened by mogres 6 months ago - 3 comments

#249 - Cache python installation in github actions

Issue - State: closed - Opened by mogres 6 months ago - 1 comment

#248 - call path validation when initiating the packing for remote recipes

Pull Request - State: closed - Opened by rugeli 6 months ago - 3 comments

#247 - Fix github action job: Version 3.9 with arch x64 not found

Pull Request - State: closed - Opened by rugeli 6 months ago - 5 comments

#246 - Move unused analysis functions

Pull Request - State: closed - Opened by mogres 6 months ago - 3 comments

#245 - Cannot pack firebase recipes due to missing "composition" key

Issue - State: closed - Opened by mogres 6 months ago - 1 comment

#244 - Firebase: incorrect reference handling

Issue - State: closed - Opened by rugeli 7 months ago

#243 - Skip staging db and aws on missing credentials

Pull Request - State: closed - Opened by rugeli 7 months ago - 1 comment

#242 - add check to workflows

Pull Request - State: closed - Opened by meganrm 8 months ago - 2 comments

#241 - Automated cleanup of expired result metadata in staging firebase database

Pull Request - State: closed - Opened by rugeli 8 months ago - 2 comments

#240 - moved mdutils to analysis requirements

Pull Request - State: closed - Opened by meganrm 8 months ago - 2 comments

#239 - Set up dependabot to update github workflows and dependencies

Issue - State: closed - Opened by mogres 8 months ago
Labels: good first issue

#237 - Update workflow versions

Pull Request - State: closed - Opened by kvegesna 9 months ago - 3 comments

#236 - disable actions on main when using `bump [tag] -> [tag]`

Issue - State: closed - Opened by meganrm 9 months ago

#235 - Update ci.yml

Pull Request - State: closed - Opened by kvegesna 9 months ago - 1 comment

#234 - set staging as the default database for S3 metadata storage

Pull Request - State: closed - Opened by rugeli 9 months ago - 4 comments

#233 - Proposal: defaulting S3 metadata uploads to staging database

Issue - State: closed - Opened by rugeli 9 months ago - 1 comment

#232 - Feature/send config data to analysis

Pull Request - State: closed - Opened by mogres 9 months ago - 2 comments

#231 - fix: convert "type" Enums to strings in v1 recipe for firebase upload duplication check

Pull Request - State: closed - Opened by rugeli 9 months ago - 2 comments

#230 - enhanced simularium url and firebase recipe path validation

Pull Request - State: closed - Opened by rugeli 9 months ago - 3 comments

#229 - There should be a timeout for database selection

Issue - State: closed - Opened by mogres 9 months ago
Labels: dataflow

#227 - Send in the config data into Analysis.py

Issue - State: closed - Opened by mogres 10 months ago
Labels: good first issue

#226 - remove pandas3d

Pull Request - State: closed - Opened by meganrm 10 months ago - 4 comments

#224 - change extended to true

Pull Request - State: closed - Opened by meganrm 10 months ago - 2 comments

#223 - Fix: prevent duplicate uploads of single packings

Pull Request - State: closed - Opened by rugeli 10 months ago - 2 comments

#222 - Publish cellPACK on pypi test installation as a third party user

Issue - State: closed - Opened by meganrm 10 months ago - 1 comment

#221 - only import aicsimgio when needed

Issue - State: closed - Opened by meganrm 10 months ago - 1 comment

#220 - Brainstorm 2024 smart goals

Issue - State: open - Opened by meganrm 10 months ago

#219 - Consider removing panda3d dependency?

Issue - State: closed - Opened by mogres 10 months ago

#218 - Enable staging Firebase database

Pull Request - State: closed - Opened by rugeli 11 months ago - 2 comments

#217 - Use an arbitrary function to set up radial gradient

Issue - State: open - Opened by mogres 11 months ago - 1 comment

#216 - Save gradient data as image

Pull Request - State: closed - Opened by mogres 11 months ago - 3 comments

#215 - Updates for variable count and size experiments

Pull Request - State: closed - Opened by mogres 11 months ago - 2 comments

#214 - Integrate the credentials for shared Firebase database

Issue - State: closed - Opened by rugeli 11 months ago

#213 - simularium files that have "_all" ie, use time, meshes don't work

Issue - State: open - Opened by meganrm about 1 year ago - 1 comment

#211 - Maintenance/update readme

Pull Request - State: closed - Opened by rugeli about 1 year ago - 5 comments

#210 - Feature/store runs in time

Pull Request - State: closed - Opened by meganrm about 1 year ago - 3 comments

#208 - Some way to map time to seed number

Issue - State: open - Opened by meganrm about 1 year ago

#207 - Feature: migrate v1 partner recipes

Pull Request - State: closed - Opened by rugeli about 1 year ago - 6 comments

#206 - Feature/save metadata to firebase

Pull Request - State: closed - Opened by rugeli about 1 year ago - 2 comments

#205 - read grid file path from recipe if provided

Pull Request - State: closed - Opened by mogres about 1 year ago - 2 comments

#204 - Add option to specify path to a grid file

Issue - State: closed - Opened by mogres about 1 year ago
Labels: enhancement, good first issue

#203 - fix/S3 uploads and new browser tabs handling

Pull Request - State: closed - Opened by rugeli about 1 year ago - 2 comments

#202 - Save/load packed objects from file

Issue - State: open - Opened by mogres about 1 year ago
Labels: enhancement

#201 - save metadata of aws result files to firebase

Pull Request - State: closed - Opened by rugeli about 1 year ago - 2 comments

#200 - Dynamically adjust the `leafsize` parameter while creating KDTree

Issue - State: closed - Opened by mogres about 1 year ago - 1 comment
Labels: enhancement, good first issue, maintenance

#199 - Export grid distances and weights as a tiff file

Issue - State: closed - Opened by mogres about 1 year ago

#198 - Feature/run inherited objects

Pull Request - State: closed - Opened by rugeli about 1 year ago - 1 comment