Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mehta-lab/waveorder issues and pull requests

#71 - Script conversion

Pull Request - State: closed - Opened by lihaoyeh over 2 years ago

#70 - reconstruction with GPU seems is limited by GPU RAM

Issue - State: closed - Opened by mattersoflight over 2 years ago

#68 - Test updates

Pull Request - State: closed - Opened by camFoltz over 2 years ago - 1 comment

#67 - update uPTI example notebooks

Pull Request - State: closed - Opened by lihaoyeh over 2 years ago

#66 - merge master into instrument_tensor

Pull Request - State: closed - Opened by ieivanov over 2 years ago

#64 - Added a function to compute 3D orientation continuity map

Pull Request - State: closed - Opened by lihaoyeh over 2 years ago

#62 - Updated units for uPTI reconstructions, merged example notebooks

Pull Request - State: closed - Opened by lihaoyeh over 2 years ago

#61 - WaveorderReader get_array position optional

Issue - State: closed - Opened by ieivanov over 2 years ago - 1 comment

#60 - Reader writer fixes

Pull Request - State: closed - Opened by camFoltz over 2 years ago - 4 comments

#58 - More efficient GPU compute

Issue - State: closed - Opened by ieivanov over 2 years ago - 2 comments
Labels: enhancement

#57 - WaveorderWriter default array name

Issue - State: closed - Opened by ieivanov over 2 years ago - 2 comments

#55 - Instrument tensor reconstruction

Pull Request - State: closed - Opened by ieivanov over 2 years ago - 9 comments

#54 - WaveorderReader get_image is not implemented for ZarrReader

Issue - State: closed - Opened by ieivanov almost 3 years ago - 1 comment

#53 - WaveorderReader should try to guess data_type and make that an optional argument

Issue - State: closed - Opened by ieivanov almost 3 years ago - 3 comments

#52 - WaveorderReader ome-zarr contrast limits

Issue - State: closed - Opened by ieivanov almost 3 years ago - 3 comments

#51 - WaveorderReader should set only the first channel as active on ome-zarr metadata

Issue - State: closed - Opened by ieivanov almost 3 years ago - 2 comments

#50 - WaveroderReader should set ome-zarr metadata color to FFFFFF

Issue - State: closed - Opened by ieivanov almost 3 years ago - 2 comments

#49 - PyPi Release Prep

Pull Request - State: closed - Opened by camFoltz almost 3 years ago

#48 - Fix bug in reading data with channels that don't have z stack

Pull Request - State: closed - Opened by ieivanov almost 3 years ago

#47 - Interface of WaveorderWriter.writer is not "pythonic"

Issue - State: closed - Opened by ieivanov almost 3 years ago - 3 comments

#46 - Multipage reader API change

Pull Request - State: closed - Opened by camFoltz almost 3 years ago

#45 - Partial FOV Loading

Issue - State: closed - Opened by camFoltz almost 3 years ago - 1 comment
Labels: enhancement

#44 - Tiled deconvolution

Issue - State: closed - Opened by camFoltz almost 3 years ago - 1 comment
Labels: enhancement

#43 - UPTI File Reader

Pull Request - State: closed - Opened by camFoltz almost 3 years ago - 3 comments

#42 - expose the auto-regularization search range to the deconvolution func…

Pull Request - State: closed - Opened by lihaoyeh about 3 years ago

#41 - add specific catch

Pull Request - State: closed - Opened by camFoltz about 3 years ago

#40 - fix bug in MM meta

Pull Request - State: closed - Opened by camFoltz about 3 years ago

#39 - Multipagetiff optmization

Pull Request - State: closed - Opened by camFoltz about 3 years ago

#38 - Zarr reader

Pull Request - State: closed - Opened by camFoltz about 3 years ago - 1 comment

#37 - OMEZarr HCS Writer

Pull Request - State: closed - Opened by camFoltz about 3 years ago - 1 comment

#36 - Writer v2

Pull Request - State: closed - Opened by camFoltz about 3 years ago - 2 comments

#35 - Automatically choose regularization parameters with L-curve

Pull Request - State: closed - Opened by tiffchien over 3 years ago - 2 comments

#34 - Update the code for fluorescence deconvolution

Pull Request - State: closed - Opened by lihaoyeh over 3 years ago - 4 comments

#33 - Update the calibration scheme

Pull Request - State: closed - Opened by lihaoyeh over 3 years ago

#32 - add padding

Pull Request - State: closed - Opened by camFoltz over 3 years ago

#31 - Denoise padding

Pull Request - State: closed - Opened by camFoltz over 3 years ago

#30 - fix bug in z_step_size setter

Pull Request - State: closed - Opened by camFoltz over 3 years ago

#29 - add z_step_size to attributes from metadata

Pull Request - State: closed - Opened by camFoltz over 3 years ago

#28 - Interrupted acquisitions

Pull Request - State: closed - Opened by bryantChhun over 3 years ago - 2 comments

#27 - update uPTI solver

Pull Request - State: closed - Opened by lihaoyeh over 3 years ago

#26 - partial loading of large ome.tiff files

Issue - State: closed - Opened by bryantChhun over 3 years ago - 2 comments
Labels: enhancement, help wanted

#25 - acquisitions that are stopped early produce incorrect zarr outputs

Issue - State: closed - Opened by bryantChhun over 3 years ago - 1 comment
Labels: bug

#24 - Release 1.0

Issue - State: closed - Opened by bryantChhun over 3 years ago

#23 - Expose step_size from metadata

Issue - State: closed - Opened by camFoltz over 3 years ago - 1 comment
Labels: enhancement

#22 - Enable parallel computing and synchronization

Issue - State: closed - Opened by bryantChhun over 3 years ago - 1 comment
Labels: enhancement

#21 - Reader to automatically determine datatype (singlepagetiff vs. multipage tiff)

Issue - State: closed - Opened by camFoltz over 3 years ago - 1 comment
Labels: enhancement

#20 - fix incorrect assignment of channel, time, in one instance of the writer

Pull Request - State: closed - Opened by camFoltz over 3 years ago - 1 comment

#18 - 2D QLIPP reconstruction test

Pull Request - State: closed - Opened by lihaoyeh over 3 years ago - 1 comment

#16 - modifying reader attributes does not modify underlying tiff-class attributes

Issue - State: closed - Opened by bryantChhun over 3 years ago - 1 comment

#14 - Pypi

Pull Request - State: closed - Opened by bryantChhun over 3 years ago