Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / mehta-lab/waveorder issues and pull requests
#71 - Script conversion
Pull Request -
State: closed - Opened by lihaoyeh over 2 years ago
#70 - reconstruction with GPU seems is limited by GPU RAM
Issue -
State: closed - Opened by mattersoflight over 2 years ago
#68 - Test updates
Pull Request -
State: closed - Opened by camFoltz over 2 years ago
- 1 comment
#67 - update uPTI example notebooks
Pull Request -
State: closed - Opened by lihaoyeh over 2 years ago
#66 - merge master into instrument_tensor
Pull Request -
State: closed - Opened by ieivanov over 2 years ago
#65 - Added notebooks that process the corresponding data reported in the uPTI paper
Pull Request -
State: closed - Opened by lihaoyeh over 2 years ago
#64 - Added a function to compute 3D orientation continuity map
Pull Request -
State: closed - Opened by lihaoyeh over 2 years ago
#63 - wrap up stitching-relavant functions and some compute functions for uPTI pipelines
Pull Request -
State: closed - Opened by lihaoyeh over 2 years ago
#62 - Updated units for uPTI reconstructions, merged example notebooks
Pull Request -
State: closed - Opened by lihaoyeh over 2 years ago
#61 - WaveorderReader get_array position optional
Issue -
State: closed - Opened by ieivanov over 2 years ago
- 1 comment
#60 - Reader writer fixes
Pull Request -
State: closed - Opened by camFoltz over 2 years ago
- 4 comments
#59 - WaveOrder multipage tiff reader needs to close the tifffile after opening, otherwise a warning is thrown.
Issue -
State: closed - Opened by camFoltz over 2 years ago
- 1 comment
#58 - More efficient GPU compute
Issue -
State: closed - Opened by ieivanov over 2 years ago
- 2 comments
Labels: enhancement
#57 - WaveorderWriter default array name
Issue -
State: closed - Opened by ieivanov over 2 years ago
- 2 comments
#56 - np.float is deprecated and throws a warning when used. Need to switch to plain float()
Issue -
State: closed - Opened by camFoltz over 2 years ago
- 1 comment
#55 - Instrument tensor reconstruction
Pull Request -
State: closed - Opened by ieivanov over 2 years ago
- 9 comments
#54 - WaveorderReader get_image is not implemented for ZarrReader
Issue -
State: closed - Opened by ieivanov almost 3 years ago
- 1 comment
#53 - WaveorderReader should try to guess data_type and make that an optional argument
Issue -
State: closed - Opened by ieivanov almost 3 years ago
- 3 comments
#52 - WaveorderReader ome-zarr contrast limits
Issue -
State: closed - Opened by ieivanov almost 3 years ago
- 3 comments
#51 - WaveorderReader should set only the first channel as active on ome-zarr metadata
Issue -
State: closed - Opened by ieivanov almost 3 years ago
- 2 comments
#50 - WaveroderReader should set ome-zarr metadata color to FFFFFF
Issue -
State: closed - Opened by ieivanov almost 3 years ago
- 2 comments
#49 - PyPi Release Prep
Pull Request -
State: closed - Opened by camFoltz almost 3 years ago
#48 - Fix bug in reading data with channels that don't have z stack
Pull Request -
State: closed - Opened by ieivanov almost 3 years ago
#47 - Interface of WaveorderWriter.writer is not "pythonic"
Issue -
State: closed - Opened by ieivanov almost 3 years ago
- 3 comments
#46 - Multipage reader API change
Pull Request -
State: closed - Opened by camFoltz almost 3 years ago
#45 - Partial FOV Loading
Issue -
State: closed - Opened by camFoltz almost 3 years ago
- 1 comment
Labels: enhancement
#44 - Tiled deconvolution
Issue -
State: closed - Opened by camFoltz almost 3 years ago
- 1 comment
Labels: enhancement
#43 - UPTI File Reader
Pull Request -
State: closed - Opened by camFoltz almost 3 years ago
- 3 comments
#42 - expose the auto-regularization search range to the deconvolution func…
Pull Request -
State: closed - Opened by lihaoyeh about 3 years ago
#41 - add specific catch
Pull Request -
State: closed - Opened by camFoltz about 3 years ago
#40 - fix bug in MM meta
Pull Request -
State: closed - Opened by camFoltz about 3 years ago
#39 - Multipagetiff optmization
Pull Request -
State: closed - Opened by camFoltz about 3 years ago
#38 - Zarr reader
Pull Request -
State: closed - Opened by camFoltz about 3 years ago
- 1 comment
#37 - OMEZarr HCS Writer
Pull Request -
State: closed - Opened by camFoltz about 3 years ago
- 1 comment
#36 - Writer v2
Pull Request -
State: closed - Opened by camFoltz about 3 years ago
- 2 comments
#35 - Automatically choose regularization parameters with L-curve
Pull Request -
State: closed - Opened by tiffchien over 3 years ago
- 2 comments
#34 - Update the code for fluorescence deconvolution
Pull Request -
State: closed - Opened by lihaoyeh over 3 years ago
- 4 comments
#33 - Update the calibration scheme
Pull Request -
State: closed - Opened by lihaoyeh over 3 years ago
#32 - add padding
Pull Request -
State: closed - Opened by camFoltz over 3 years ago
#31 - Denoise padding
Pull Request -
State: closed - Opened by camFoltz over 3 years ago
#30 - fix bug in z_step_size setter
Pull Request -
State: closed - Opened by camFoltz over 3 years ago
#29 - add z_step_size to attributes from metadata
Pull Request -
State: closed - Opened by camFoltz over 3 years ago
#28 - Interrupted acquisitions
Pull Request -
State: closed - Opened by bryantChhun over 3 years ago
- 2 comments
#27 - update uPTI solver
Pull Request -
State: closed - Opened by lihaoyeh over 3 years ago
#26 - partial loading of large ome.tiff files
Issue -
State: closed - Opened by bryantChhun over 3 years ago
- 2 comments
Labels: enhancement, help wanted
#25 - acquisitions that are stopped early produce incorrect zarr outputs
Issue -
State: closed - Opened by bryantChhun over 3 years ago
- 1 comment
Labels: bug
#24 - Release 1.0
Issue -
State: closed - Opened by bryantChhun over 3 years ago
#23 - Expose step_size from metadata
Issue -
State: closed - Opened by camFoltz over 3 years ago
- 1 comment
Labels: enhancement
#22 - Enable parallel computing and synchronization
Issue -
State: closed - Opened by bryantChhun over 3 years ago
- 1 comment
Labels: enhancement
#21 - Reader to automatically determine datatype (singlepagetiff vs. multipage tiff)
Issue -
State: closed - Opened by camFoltz over 3 years ago
- 1 comment
Labels: enhancement
#20 - fix incorrect assignment of channel, time, in one instance of the writer
Pull Request -
State: closed - Opened by camFoltz over 3 years ago
- 1 comment
#18 - 2D QLIPP reconstruction test
Pull Request -
State: closed - Opened by lihaoyeh over 3 years ago
- 1 comment
#16 - modifying reader attributes does not modify underlying tiff-class attributes
Issue -
State: closed - Opened by bryantChhun over 3 years ago
- 1 comment
#14 - Pypi
Pull Request -
State: closed - Opened by bryantChhun over 3 years ago