Ecosyste.ms: Issues

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GitHub / mdshw5/fastqp issues and pull requests

#35 - Migrate CI/CD to GH Actions

Issue - State: open - Opened by mdshw5 8 months ago

#34 - Fix axis for qualplot in newer versions of matplotlib

Issue - State: open - Opened by mdshw5 8 months ago

#33 - ZeroDivisionError: division by zero

Issue - State: open - Opened by seyfim over 4 years ago - 1 comment

#32 - not detecting adapter seq

Issue - State: closed - Opened by divyoj about 6 years ago - 1 comment

#31 - Plotting raises exceptions with matplotlib-2.2.2

Issue - State: closed - Opened by unode over 6 years ago - 2 comments

#30 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by mdshw5 almost 7 years ago

#29 - README.md tweaks

Pull Request - State: closed - Opened by ucpete about 7 years ago - 1 comment

#28 - Handle empty list if there are no bad kmers

Pull Request - State: closed - Opened by ghost about 7 years ago

#27 - output text files

Issue - State: open - Opened by macmanes about 7 years ago - 3 comments
Labels: Hacktoberfest

#26 - An ZeroDivisionError when I run fastqp.py

Issue - State: closed - Opened by EnzoAndree over 7 years ago - 8 comments
Labels: bug

#25 - Update all usages of mpl.rc to mpl.cycler

Pull Request - State: closed - Opened by tomsherborne about 8 years ago

#24 - Request module support for ewels/MultiQC

Issue - State: open - Opened by mdshw5 about 8 years ago
Labels: enhancement, Hacktoberfest

#23 - Update plots.py to use the new matplotlib cycler

Issue - State: open - Opened by mdshw5 about 8 years ago
Labels: enhancement, Hacktoberfest

#22 - Exit early if the file is empty

Issue - State: closed - Opened by mdshw5 almost 9 years ago - 1 comment
Labels: bug

#21 - Make --count-duplicates mutually exclusive with downsampling

Issue - State: open - Opened by mdshw5 almost 9 years ago
Labels: enhancement

#20 - Bug in count-duplicates feature

Issue - State: closed - Opened by edurand about 9 years ago - 1 comment

#19 - Make pivoted text table by default

Issue - State: closed - Opened by mdshw5 about 9 years ago - 3 comments
Labels: enhancement, wontfix

#18 - fastqp stuck with very long consensus fastq file

Issue - State: closed - Opened by peterdfields about 9 years ago - 2 comments

#17 - Option to ignore reads flagged as "failing" by illumina's base calling

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: enhancement

#16 - Allow QC fail threshold parameters to be set by the user

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: enhancement

#15 - Handle multiple input files as a batch

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: enhancement

#14 - Import of tidy data table into Spotfire

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: testing

#14 - Import of tidy data table into Spotfire

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: testing

#13 - Document analysis modules

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: enhancement

#12 - Build wheels for numpy and scipy

Issue - State: open - Opened by mdshw5 about 9 years ago
Labels: testing

#11 - Match a list of known adapter sequences

Issue - State: closed - Opened by mdshw5 over 9 years ago - 2 comments
Labels: enhancement

#10 - Use mdshw5/simplesam for Sam and Bam parsing

Issue - State: closed - Opened by mdshw5 over 9 years ago
Labels: enhancement

#9 - Regression through kmer spectrum to identify outliers

Issue - State: closed - Opened by mdshw5 over 9 years ago
Labels: enhancement

#8 - Calculate observed/expected ratio for kmers

Issue - State: closed - Opened by mdshw5 over 9 years ago
Labels: enhancement

#7 - Make plots using plot.ly

Issue - State: closed - Opened by mdshw5 almost 10 years ago

#6 - Add fq as acceptable extension.

Pull Request - State: closed - Opened by danielecook about 10 years ago

#5 - Plot cycle-specific kmers

Issue - State: closed - Opened by mdshw5 over 10 years ago
Labels: enhancement

#4 - Don't rely on dictionary ordering for printing cycle stats

Issue - State: closed - Opened by mdshw5 over 10 years ago
Labels: bug

#3 - Track sequence duplication level using bloom filter

Issue - State: closed - Opened by mdshw5 over 10 years ago
Labels: enhancement

#2 - Produce M-bias plots for GEMINI reads

Issue - State: closed - Opened by mdshw5 over 10 years ago
Labels: enhancement

#1 - Summarize methylation statistics from bisulfite DNA-seq libraries

Issue - State: open - Opened by mdshw5 almost 11 years ago - 1 comment
Labels: enhancement