mdozmorov/genome_runner issues and pull requests

#71 - Add 'Monocytescd14ro01746' to Tier2 cell types

Issue - State: closed - Opened by lkscara over 9 years ago

#71 - Add 'Monocytescd14ro01746' to Tier2 cell types

Issue - State: closed - Opened by lkscara over 9 years ago

#70 - dbcreator_encode fixes

Issue - State: closed - Opened by mdozmorov over 9 years ago

#70 - dbcreator_encode fixes

Issue - State: closed - Opened by mdozmorov over 9 years ago

#69 - Installation presupposes bioconductor is loaded

Issue - State: closed - Opened by gilesc about 10 years ago - 1 comment

#69 - Installation presupposes bioconductor is loaded

Issue - State: closed - Opened by gilesc about 10 years ago - 1 comment

#68 - Need to change documentation to explicitly specify python 2

Issue - State: closed - Opened by gilesc about 10 years ago - 1 comment

#68 - Need to change documentation to explicitly specify python 2

Issue - State: closed - Opened by gilesc about 10 years ago - 1 comment

#67 - Broken pipe on low memory machine

Issue - State: closed - Opened by mdozmorov over 10 years ago

#67 - Broken pipe on low memory machine

Issue - State: closed - Opened by mdozmorov over 10 years ago

#66 - command line run gzips 'background' file, ungzips gzipped 'fois'

Issue - State: open - Opened by mdozmorov over 10 years ago - 1 comment

#66 - command line run gzips 'background' file, ungzips gzipped 'fois'

Issue - State: open - Opened by mdozmorov over 10 years ago - 1 comment

#65 - RSID conversion not working for custom 'text' uploaded background

Issue - State: closed - Opened by lkscara over 10 years ago - 2 comments

#65 - RSID conversion not working for custom 'text' uploaded background

Issue - State: closed - Opened by lkscara over 10 years ago - 2 comments

#64 - Background and Custom Feature as rsIDs

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#64 - Background and Custom Feature as rsIDs

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#63 - Total run time? And Annotation finish time

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#63 - Total run time? And Annotation finish time

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#62 - Get rid of non-critical warning when starting command line

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#62 - Get rid of non-critical warning when starting command line

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#61 - Detailed analysis output to include descriptions from 'gf_descriptions.txt

Issue - State: closed - Opened by mdozmorov over 10 years ago

#61 - Detailed analysis output to include descriptions from 'gf_descriptions.txt

Issue - State: closed - Opened by mdozmorov over 10 years ago

#60 - Add disclaimer

Issue - State: closed - Opened by mdozmorov over 10 years ago

#60 - Add disclaimer

Issue - State: closed - Opened by mdozmorov over 10 years ago

#59 - Browsers compatibility

Issue - State: closed - Opened by mdozmorov over 10 years ago

#59 - Browsers compatibility

Issue - State: closed - Opened by mdozmorov over 10 years ago

#58 - rsID conversion from command line does not work

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#58 - rsID conversion from command line does not work

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#57 - Annotation print statements into output file

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#57 - Annotation print statements into output file

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#56 - bgk_overlaps.txt not working in command line version

Issue - State: closed - Opened by lkscara over 10 years ago - 1 comment

#56 - bgk_overlaps.txt not working in command line version

Issue - State: closed - Opened by lkscara over 10 years ago - 1 comment

#55 - GFS and FOIs in custom_data directory not working in remote celery version

Issue - State: closed - Opened by lkscara over 10 years ago - 2 comments

#55 - GFS and FOIs in custom_data directory not working in remote celery version

Issue - State: closed - Opened by lkscara over 10 years ago - 2 comments

#54 - Run crash

Issue - State: closed - Opened by mdozmorov over 10 years ago

#54 - Run crash

Issue - State: closed - Opened by mdozmorov over 10 years ago

#53 - Annotation analysis to be optional

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#53 - Annotation analysis to be optional

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#52 - workers

Issue - State: closed - Opened by mdozmorov over 10 years ago

#52 - workers

Issue - State: closed - Opened by mdozmorov over 10 years ago

#51 - get_progress is firing every second even after analysis completed

Issue - State: closed - Opened by lkscara over 10 years ago

#51 - get_progress is firing every second even after analysis completed

Issue - State: closed - Opened by lkscara over 10 years ago

#50 - restart optimizer on a specific folder

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#50 - restart optimizer on a specific folder

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#49 - hypergeom4 argument to handle rsids

Issue - State: closed - Opened by mdozmorov over 10 years ago

#49 - hypergeom4 argument to handle rsids

Issue - State: closed - Opened by mdozmorov over 10 years ago

#48 - Uploading files with any extension

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#48 - Uploading files with any extension

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#47 - rsID annotation bug

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#47 - rsID annotation bug

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#46 - crash when pasting background coordinates

Issue - State: closed - Opened by mdozmorov over 10 years ago

#46 - crash when pasting background coordinates

Issue - State: closed - Opened by mdozmorov over 10 years ago

#45 - non-sorted rsID file handling

Issue - State: closed - Opened by mdozmorov over 10 years ago

#45 - non-sorted rsID file handling

Issue - State: closed - Opened by mdozmorov over 10 years ago

#44 - Checking a GF in the checkbox tree creates a new tab with error message

Issue - State: closed - Opened by lkscara over 10 years ago - 2 comments

#44 - Checking a GF in the checkbox tree creates a new tab with error message

Issue - State: closed - Opened by lkscara over 10 years ago - 2 comments

#43 - crash if ONE GF is selected in SEARCHBOX

Issue - State: closed - Opened by mdozmorov over 10 years ago

#43 - crash if ONE GF is selected in SEARCHBOX

Issue - State: closed - Opened by mdozmorov over 10 years ago

#42 - Annotation analysis should be score- and strand-specific

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#42 - Annotation analysis should be score- and strand-specific

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#41 - Annotation analysis progress bar is not complete after analysis finishes

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#41 - Annotation analysis progress bar is not complete after analysis finishes

Issue - State: closed - Opened by mdozmorov over 10 years ago - 1 comment

#40 - pre-processing FOIs in hypergeom4

Issue - State: closed - Opened by lkscara over 10 years ago

#40 - pre-processing FOIs in hypergeom4

Issue - State: closed - Opened by lkscara over 10 years ago

#39 - out.txt - do we need it?

Issue - State: closed - Opened by mdozmorov over 10 years ago

#39 - out.txt - do we need it?

Issue - State: closed - Opened by mdozmorov over 10 years ago

#38 - Speed up optimizer

Issue - State: closed - Opened by mdozmorov over 10 years ago - 3 comments
Labels: enhancement

#38 - Speed up optimizer

Issue - State: closed - Opened by mdozmorov over 10 years ago - 3 comments
Labels: enhancement

#37 - genomic features from fuzzy search box are not passed

Issue - State: closed - Opened by mdozmorov over 10 years ago
Labels: bug

#37 - genomic features from fuzzy search box are not passed

Issue - State: closed - Opened by mdozmorov over 10 years ago
Labels: bug

#36 - Filtering by strand and score breaks

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#36 - Filtering by strand and score breaks

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments

#35 - Add strand filtering

Issue - State: closed - Opened by lkscara over 10 years ago
Labels: enhancement

#35 - Add strand filtering

Issue - State: closed - Opened by lkscara over 10 years ago
Labels: enhancement

#34 - Wrong exon files paths

Issue - State: closed - Opened by mdozmorov over 10 years ago

#34 - Wrong exon files paths

Issue - State: closed - Opened by mdozmorov over 10 years ago

#31 - Annotation analysis bug

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments
Labels: bug

#31 - Annotation analysis bug

Issue - State: closed - Opened by mdozmorov over 10 years ago - 2 comments
Labels: bug

#30 - DCC score calculations not working. We need to use the truncated name as the key.

Issue - State: closed - Opened by lkscara over 10 years ago - 3 comments
Labels: bug

#30 - DCC score calculations not working. We need to use the truncated name as the key.

Issue - State: closed - Opened by lkscara over 10 years ago - 3 comments
Labels: bug

#17 - Ability for the user to submit a list of rsIDs

Issue - State: closed - Opened by mdozmorov over 10 years ago
Labels: enhancement

#17 - Ability for the user to submit a list of rsIDs

Issue - State: closed - Opened by mdozmorov over 10 years ago
Labels: enhancement

#10 - DB: Cistrome data

Issue - State: closed - Opened by mdozmorov almost 11 years ago - 1 comment
Labels: enhancement

GitHub / mdozmorov/genome_runner issues and pull requests