Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mdozmorov/genome_runner issues and pull requests

#129 - gr logo on results page has no link

Issue - State: closed - Opened by mdozmorov over 8 years ago

#127 - Monte-Carlo completely disabled, chisquare runs instead

Issue - State: closed - Opened by mdozmorov over 8 years ago

#125 - Redirect user to shiny interface after annotation analysis is completed

Issue - State: closed - Opened by lkscara over 8 years ago - 1 comment

#124 - Annotation is broken

Issue - State: closed - Opened by mdozmorov over 8 years ago - 2 comments

#123 - gzip: stdout: Broken pipe

Issue - State: closed - Opened by mdozmorov over 8 years ago - 2 comments

#122 - GR ID not being passed to logger

Issue - State: closed - Opened by lkscara over 8 years ago

#120 - .tbi files causing problem with custom GFS groups

Issue - State: closed - Opened by lkscara over 8 years ago

#119 - Web version will not let user submit without selecting a GF group

Issue - State: closed - Opened by lkscara over 8 years ago - 1 comment

#118 - Search box 'Select/Unselect' buttons don't work

Issue - State: open - Opened by mdozmorov over 8 years ago

#118 - Search box 'Select/Unselect' buttons don't work

Issue - State: open - Opened by mdozmorov over 8 years ago

#117 - Shiny app optimization

Issue - State: closed - Opened by mdozmorov over 8 years ago

#116 - Download of small runs

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#116 - Download of small runs

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#115 - Differential regulatory analysis does not work

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#115 - Differential regulatory analysis does not work

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#114 - Download does not work

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#114 - Download does not work

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#113 - Weighted enrichment

Issue - State: open - Opened by mdozmorov almost 9 years ago - 1 comment
Labels: enhancement

#113 - Weighted enrichment

Issue - State: open - Opened by mdozmorov almost 9 years ago - 1 comment
Labels: enhancement

#112 - Dynamic width of PDF

Issue - State: closed - Opened by mdozmorov almost 9 years ago

#112 - Dynamic width of PDF

Issue - State: closed - Opened by mdozmorov almost 9 years ago

#111 - Speed up MC by checking p-values at each power of 10 step

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#111 - Speed up MC by checking p-values at each power of 10 step

Issue - State: closed - Opened by mdozmorov almost 9 years ago - 1 comment

#110 - Correct MC p-value when OR < 1

Issue - State: closed - Opened by mdozmorov almost 9 years ago

#110 - Correct MC p-value when OR < 1

Issue - State: closed - Opened by mdozmorov almost 9 years ago

#109 - Database and gf_Annot todo fixes

Issue - State: open - Opened by mdozmorov about 9 years ago - 1 comment

#109 - Database and gf_Annot todo fixes

Issue - State: open - Opened by mdozmorov about 9 years ago - 1 comment

#108 - dbcreator to process individual BED files by score/strand

Issue - State: open - Opened by mdozmorov about 9 years ago

#107 - Optimizer script 'gr-optimizer' lacks 'main' attribute

Issue - State: closed - Opened by mdozmorov about 9 years ago

#107 - Optimizer script 'gr-optimizer' lacks 'main' attribute

Issue - State: closed - Opened by mdozmorov about 9 years ago

#106 - Slowness of web app - need for optimization

Issue - State: closed - Opened by mdozmorov over 9 years ago

#105 - 413 Request Entity Too Large

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#105 - 413 Request Entity Too Large

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#104 - setup_cg.sh installation issues

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#104 - setup_cg.sh installation issues

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#102 - Annotation analysis breaks

Issue - State: closed - Opened by mdozmorov over 9 years ago

#102 - Annotation analysis breaks

Issue - State: closed - Opened by mdozmorov over 9 years ago

#101 - server module missing biocLite

Issue - State: closed - Opened by mdozmorov over 9 years ago - 2 comments

#101 - server module missing biocLite

Issue - State: closed - Opened by mdozmorov over 9 years ago - 2 comments

#100 - Front page, "Uploading files..." always stays on the page

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#100 - Front page, "Uploading files..." always stays on the page

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#99 - Large numbers in scientific format in 'detailed.txt'

Issue - State: closed - Opened by mdozmorov over 9 years ago

#99 - Large numbers in scientific format in 'detailed.txt'

Issue - State: closed - Opened by mdozmorov over 9 years ago

#98 - Upload GFs not working

Issue - State: closed - Opened by mdozmorov over 9 years ago

#98 - Upload GFs not working

Issue - State: closed - Opened by mdozmorov over 9 years ago

#95 - Minor GUI tweaks

Issue - State: closed - Opened by mdozmorov over 9 years ago

#95 - Minor GUI tweaks

Issue - State: closed - Opened by mdozmorov over 9 years ago

#93 - dbcreator_encode: K562 bug

Issue - State: open - Opened by mdozmorov over 9 years ago - 4 comments

#93 - dbcreator_encode: K562 bug

Issue - State: open - Opened by mdozmorov over 9 years ago - 4 comments

#92 - DB: Trace download issues

Issue - State: closed - Opened by mdozmorov over 9 years ago

#92 - DB: Trace download issues

Issue - State: closed - Opened by mdozmorov over 9 years ago

#91 - Prepare GR for release

Issue - State: open - Opened by mdozmorov over 9 years ago

#91 - Prepare GR for release

Issue - State: open - Opened by mdozmorov over 9 years ago

#90 - DB: mm9

Issue - State: closed - Opened by mdozmorov over 9 years ago - 4 comments

#89 - Cell type-specific FDR adjustments

Issue - State: closed - Opened by mdozmorov over 9 years ago

#89 - Cell type-specific FDR adjustments

Issue - State: closed - Opened by mdozmorov over 9 years ago

#88 - Handling negative numbers in 2x2 contingency table

Issue - State: closed - Opened by mdozmorov over 9 years ago

#88 - Handling negative numbers in 2x2 contingency table

Issue - State: closed - Opened by mdozmorov over 9 years ago

#86 - dbcreator_encode: output url of the downloaded files

Issue - State: closed - Opened by mdozmorov over 9 years ago

#86 - dbcreator_encode: output url of the downloaded files

Issue - State: closed - Opened by mdozmorov over 9 years ago

#84 - Annotation analysis is broken

Issue - State: closed - Opened by lkscara over 9 years ago - 2 comments

#84 - Annotation analysis is broken

Issue - State: closed - Opened by lkscara over 9 years ago - 2 comments

#83 - Calculating p-values

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#83 - Calculating p-values

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#82 - Tabix -B option

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#80 - DB: FANTOM5 data

Issue - State: closed - Opened by mdozmorov over 9 years ago

#80 - DB: FANTOM5 data

Issue - State: closed - Opened by mdozmorov over 9 years ago

#79 - wgEncodeAwgSegmentationSegway

Issue - State: closed - Opened by mdozmorov over 9 years ago

#79 - wgEncodeAwgSegmentationSegway

Issue - State: closed - Opened by mdozmorov over 9 years ago

#78 - missing tier

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#78 - missing tier

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#77 - additional ENCODE/chromStates

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#77 - additional ENCODE/chromStates

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment

#76 - ENCODE TFBS

Issue - State: closed - Opened by mdozmorov over 9 years ago

#76 - ENCODE TFBS

Issue - State: closed - Opened by mdozmorov over 9 years ago

#75 - DNAse imputed extra files

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment
Labels: bug

#75 - DNAse imputed extra files

Issue - State: closed - Opened by mdozmorov over 9 years ago - 1 comment
Labels: bug

#74 - Uniqueness of file names

Issue - State: closed - Opened by mdozmorov over 9 years ago
Labels: bug, invalid

#74 - Uniqueness of file names

Issue - State: closed - Opened by mdozmorov over 9 years ago
Labels: bug, invalid

#73 - Score sorting by quantiles

Issue - State: closed - Opened by mdozmorov over 9 years ago

#73 - Score sorting by quantiles

Issue - State: closed - Opened by mdozmorov over 9 years ago