mcellteam/mcell issues and pull requests

#44 - Model Conversion Issue: MDL to Data Model

Issue - State: open - Opened by amgc5 over 2 years ago

#43 - Bump urllib3 from 1.22 to 1.26.5 in /docs/pyMCell

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago - 3 comments
Labels: dependencies

#42 - Bump lxml from 3.7.3 to 4.6.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#41 - Bump pygments from 2.2.0 to 2.7.4 in /docs/pyMCell

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago - 3 comments
Labels: dependencies

#40 - Bump jinja2 from 2.10 to 2.11.3 in /docs/pyMCell

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago - 3 comments
Labels: dependencies

#39 - Bump lxml from 3.7.3 to 4.6.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#38 - Calculation of reaction probabilities

Issue - State: open - Opened by suryaR-15 about 4 years ago - 1 comment

#37 - Bump requests from 2.18.4 to 2.20.0 in /docs/pyMCell

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#36 - Bump urllib3 from 1.22 to 1.24.2 in /docs/pyMCell

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#35 - Improve hit counting in pyMCell

Issue - State: open - Opened by adamhusar about 5 years ago

#34 - state of mcell?

Issue - State: open - Opened by dellelce over 5 years ago - 1 comment

#33 - Nfsim dynamic meshes pymcell

Pull Request - State: open - Opened by andreavs about 6 years ago

#32 - setup.py sdist isn't building nfsim

Issue - State: open - Opened by jczech over 6 years ago

#31 - Add build requirements for OSX to README.

Issue - State: open - Opened by jczech over 6 years ago
Labels: enhancement

#30 - "Molecule release is unable to find surface upon which to place molecule"

Issue - State: closed - Opened by Katospiegel over 7 years ago - 1 comment

#29 - Concentration clamp with non-diffusing molecule

Issue - State: open - Opened by jczech over 7 years ago

#28 - Nfsim

Pull Request - State: closed - Opened by jjtapia over 8 years ago

#27 - Surface molecule CROSSINGS and HITS don't work

Issue - State: open - Opened by jczech over 8 years ago - 1 comment

#26 - fixed CMakeLists.txt bug

Pull Request - State: closed - Opened by tgbugs over 8 years ago

#25 - Change DG keyword and default setting

Issue - State: closed - Opened by jczech over 8 years ago - 1 comment

#24 - ABSORPTIVE = ALL_MOLECULES

Issue - State: open - Opened by jczech almost 9 years ago
Labels: bug

#23 - Visualizing molecules for PBCs (non-traditional form)

Issue - State: closed - Opened by jczech almost 9 years ago - 1 comment

#22 - Surface molecules should obey PBCs

Issue - State: closed - Opened by jczech almost 9 years ago - 1 comment

#21 - Overlapping/coplanar faces can cause leaks

Issue - State: closed - Opened by jczech almost 9 years ago - 9 comments
Labels: bug

#20 - All geometry files in dynamic geometry file

Issue - State: closed - Opened by jczech almost 9 years ago - 1 comment
Labels: enhancement

#19 - Intersecting reflective meshes

Issue - State: open - Opened by jczech almost 9 years ago - 1 comment

#18 - Add support for INCLUDE_FILE in DG parser

Issue - State: closed - Opened by jczech about 9 years ago - 1 comment

#17 - Report File Name and Line Number for all MDL Errors

Issue - State: closed - Opened by cnlbob about 9 years ago - 1 comment
Labels: bug

#16 - Disallow use of microcopic reversibility with tri-molecular reactions

Issue - State: closed - Opened by haskelladdict over 9 years ago - 1 comment

#15 - Instantiating objects with same name

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment

#14 - Changing unimolecular rate constant with checkpointing

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment

#13 - Deprecate DReAMM related viz commands from QRG

Issue - State: closed - Opened by jczech about 10 years ago - 1 comment
Labels: enhancement

#12 - Add CELLBLENDER and ASCII MODE to QRG

Issue - State: closed - Opened by jczech about 10 years ago - 1 comment
Labels: enhancement

#11 - NOEXIT option for CHECKPOINT_ITERATIONS

Issue - State: closed - Opened by jczech over 10 years ago - 1 comment
Labels: enhancement

#10 - Remove D_ref

Issue - State: closed - Opened by jczech over 10 years ago - 1 comment

#9 - Add new checkpointing features to QRG

Issue - State: closed - Opened by jczech over 10 years ago - 1 comment
Labels: enhancement

#8 - Parser doesn't check if CHECKPOINT files are set for CHECKPOINT_REALTIME

Issue - State: closed - Opened by haskelladdict over 10 years ago
Labels: bug

#7 - Changing unimolecular reaction rates through checkpointing

Issue - State: closed - Opened by jczech over 10 years ago - 1 comment
Labels: bug

#6 - Release site with SHAPE set to uninstantiated box object

Issue - State: closed - Opened by jczech over 10 years ago - 1 comment
Labels: bug

#5 - Setting C99 flag changes reaction probability reporting on 32-bit builds

Issue - State: closed - Opened by jczech almost 11 years ago - 1 comment
Labels: bug

#4 - Setting RADIAL_DIRECTION or RADIAL_SUBDIVISIONS to zero will give an error

Issue - State: closed - Opened by jczech almost 11 years ago - 1 comment
Labels: bug

#3 - Passing illegal command line arguments can cause a segfault

Issue - State: closed - Opened by jczech almost 11 years ago - 2 comments
Labels: bug

#2 - Changing ITERATION_NUMBERS in viz data can change simulation results

Issue - State: closed - Opened by jczech about 11 years ago - 3 comments
Labels: wontfix

#1 - Cannot disable EPS_C warning

Issue - State: closed - Opened by jczech about 11 years ago - 1 comment
Labels: bug

GitHub / mcellteam/mcell issues and pull requests