Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mcellteam/cellblender issues and pull requests

#122 - Potential bug when trying to run BNG model

Issue - State: open - Opened by FAnderl over 1 year ago

#121 - Issue when trying to import BNGL model into CellBlender 2.93

Issue - State: closed - Opened by FAnderl over 1 year ago - 2 comments

#119 - Minor fix (line 29)

Pull Request - State: open - Opened by kant over 2 years ago

#118 - Visualize Neurons from NeuPrint in Blender

Issue - State: open - Opened by Specom about 3 years ago

#117 - Tutorial to find CellBlender panel in Blender 2.93

Issue - State: open - Opened by sungjae-cho about 3 years ago

#116 - Fix SBML import

Pull Request - State: open - Opened by tebuck about 4 years ago

#115 - Bng sim for data model

Pull Request - State: closed - Opened by ASinanSaglam over 4 years ago - 1 comment

#114 - Data model construction via XML

Pull Request - State: closed - Opened by ASinanSaglam over 4 years ago - 1 comment

#113 - MCell only using 5% of my CPU power.

Issue - State: closed - Opened by restclusion over 4 years ago - 1 comment

#112 - Blender not showing CellBlender's "Scene" or "Object" Properties

Issue - State: closed - Opened by restclusion over 4 years ago - 2 comments

#111 - Defining 'extracellular' molecules

Issue - State: open - Opened by suryaR-15 almost 5 years ago - 3 comments

#110 - Update SBML Spatial import

Pull Request - State: closed - Opened by tebuck over 5 years ago

#108 - Export geometry doesn't auto-triangulate meshes

Issue - State: open - Opened by jczech over 7 years ago - 1 comment

#107 - Allow export of ASCII viz data

Issue - State: open - Opened by jczech about 8 years ago

#106 - Development Branch: Installation ImportError

Issue - State: closed - Opened by BKPetkov about 8 years ago - 4 comments

#105 - Fix Parameter Search and Sort capabilites

Issue - State: closed - Opened by cnlbob over 8 years ago - 1 comment
Labels: Priority-Medium

#104 - allow users to manually set project_files directory

Issue - State: open - Opened by tgbugs over 8 years ago - 1 comment

#103 - missing license file

Issue - State: closed - Opened by tgbugs over 8 years ago - 1 comment

#102 - Creating model objects fails [Blender 2.69 backcompat issue]

Issue - State: open - Opened by JEphron almost 9 years ago - 2 comments

#101 - Add Python 2.6 support for sim runner

Issue - State: open - Opened by jczech almost 9 years ago

#100 - Issue92

Pull Request - State: closed - Opened by jjtapia almost 9 years ago

#99 - Development

Pull Request - State: closed - Opened by jjtapia almost 9 years ago

#98 - Deleting molecules can make errors difficult to fix

Issue - State: open - Opened by cnlbob almost 9 years ago

#97 - Page Numbers on QRG PDF

Issue - State: closed - Opened by cnlbob almost 9 years ago - 2 comments

#96 - Conflicts in MDL String Reaction Output

Issue - State: open - Opened by cnlbob almost 9 years ago

#95 - Add support for OUTPUT_BUFFER_SIZE, TIME_LIST, and ITERATION_LIST

Issue - State: open - Opened by jczech almost 9 years ago - 1 comment

#94 - Assign "All Molecules" to Surface Property Command

Issue - State: closed - Opened by jczech almost 9 years ago - 3 comments
Labels: enhancement

#93 - Create test for geometry importer

Issue - State: closed - Opened by jczech almost 9 years ago - 3 comments

#92 - Implement sbml importer as an executable

Issue - State: closed - Opened by jjtapia about 9 years ago - 3 comments

#91 - Sbmlimporter

Pull Request - State: closed - Opened by jjtapia about 9 years ago

#90 - Merge Bob's latest changes

Pull Request - State: closed - Opened by jjtapia about 9 years ago

#89 - CellBlender version compatibility

Issue - State: open - Opened by bluescript1 over 9 years ago - 4 comments

#88 - Issue forward compatibility warning

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment
Labels: enhancement, wontfix

#87 - Refreshing molecules during MCell run slows Blender

Issue - State: closed - Opened by cnlbob over 9 years ago - 1 comment

#84 - Add all contributors to bl_info

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment

#84 - Add all contributors to bl_info

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment

#83 - Update CHANGELOG

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment

#82 - Simulation runner bug

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment
Labels: bug, Priority-High

#81 - Running a new simulation while one is already running

Issue - State: closed - Opened by jczech over 9 years ago - 1 comment
Labels: bug

#80 - Relevant error messages for SBML importer

Issue - State: closed - Opened by jjtapia over 9 years ago - 1 comment
Labels: Type-Defect, Priority-Low

#79 - Visualization classes

Issue - State: open - Opened by jjtapia over 9 years ago
Labels: enhancement, Type-Task, Priority-Medium

#78 - Complex MDL-output expressions

Issue - State: closed - Opened by jjtapia over 9 years ago - 1 comment
Labels: enhancement, Type-Task, Priority-Medium

#77 - Add molecule description field to cellblender

Issue - State: closed - Opened by jjtapia over 9 years ago - 2 comments
Labels: enhancement, Type-Task, Priority-Medium

#76 - Export from CellBlender not possible if folder already exists

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 4 comments
Labels: Type-Task, auto-migrated, Priority-Low

#76 - Export from CellBlender not possible if folder already exists

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 4 comments
Labels: Type-Task, auto-migrated, Priority-Low

#75 - BNG-SBML file imported from cache rather than fresh import

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#74 - Can't install cellblender in Blender2.72b

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 4 comments
Labels: auto-migrated, Type-Defect, Priority-High, Usability

#73 - Mesh analyzer only works when objects are toggled "visible"

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: bug, auto-migrated, Type-Defect, Priority-Low

#73 - Mesh analyzer only works when objects are toggled "visible"

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: bug, auto-migrated, Type-Defect, Priority-Low

#72 - Index out of range referencing: cellblender.simulation_popen_list[index]

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Low

#71 - Show/hide partition boundaries bug

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#70 - Add Step value to Reaction Output Settings

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#69 - Mesh analysis tool not behaving as expected

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#68 - Parameter errors ignore Invalid Policy setting

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#67 - Objects can't be removed from Model Objects list under certain circumstances

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#66 - Replace SHA ID with Git ID to track CB version

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#65 - Optionally allow parameters to be displayed with engineering notation

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#64 - Better indication of molecule type in release site

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#63 - Update the "info tips"

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 3 comments
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#62 - Molecule positions will always reappear on the active layer

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#61 - Users can add molecule viz state to model objects list

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#60 - Deleting molecule viz state breaks visualization

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#59 - Allow selective plotting

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#58 - Old molecule viz state does not go away

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#57 - Update release pattern defaults

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#56 - Reaction names not being checked for validity

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: auto-migrated, Priority-Medium, Type-Defect

#55 - No warning/error when start seed is larger than end seed

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: auto-migrated, Priority-Medium, Type-Defect

#54 - Sorting and searching of parameter list

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: bug, auto-migrated, Priority-Medium, Type-Defect

#53 - Inconsistency in naming of items

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: Type-Task, auto-migrated, Priority-Medium

#52 - Counting in invalid mesh object

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: auto-migrated, Priority-Medium, Type-Defect

#51 - Support for TRIGGER statements

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#50 - Support for more COUNT statements

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#49 - LIST based release sites

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 9 comments
Labels: enhancement, Type-Task, auto-migrated, Priority-Medium

#48 - Importing over existing objects with identical names

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: auto-migrated, Priority-Medium, Type-Defect

#47 - Importing objects with same names in different metaobjects

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: Type-Task, auto-migrated, Priority-Medium

#46 - Store API version in blend

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#45 - Support transforms in Python mesh importer

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: Type-Task, auto-migrated, Priority-Medium

#44 - Namespace of molecules and surface classes

Issue - State: open - Opened by GoogleCodeExporter over 9 years ago
Labels: Type-Task, auto-migrated, Priority-Medium

#43 - Allow plotting of reactions

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#42 - Context error when running simulation

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: auto-migrated, Priority-Medium, Type-Defect

#41 - Change "Toggle All" molecule viz button

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#40 - Fix absolute viz directory problem

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#39 - Update CHANGELOG

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago
Labels: Type-Task, auto-migrated, Priority-Medium

#38 - Update README

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#37 - Introduce

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: auto-migrated, Priority-Medium, Type-Defect

#36 - Parameters - Implement a generic interface for entering MCell Parameters

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#35 - Supporting release patterns

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#34 - Supporting time-dependent rate constants

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#33 - Coding Standards for libMCell

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 5 comments
Labels: Type-Task, auto-migrated, Priority-Medium

#32 - Add mouse over descriptions for all buttons, drop-down menus, etc

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#31 - Test: Activity Notifications

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#30 - Updating CellBlender Tutorials

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 4 comments
Labels: Type-Task, auto-migrated, Priority-Medium

#29 - Handle existing rxn/viz data when running new simulations

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 1 comment
Labels: Type-Task, auto-migrated, Priority-Medium

#28 - Load Factory Settings Crash

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 3 comments
Labels: auto-migrated, Priority-Medium, Type-Defect

#27 - Implement Plotting for Per-Seed subfolders in react_data

Issue - State: closed - Opened by GoogleCodeExporter over 9 years ago - 2 comments
Labels: Type-Task, Milestone-Release1.0, auto-migrated, Priority-Medium