Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mcapuccini/MaRe issues and pull requests

#88 - Bump hadoop-common from 2.7.7 to 3.2.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#87 - Bump hadoop-common from 2.7.7 to 2.10.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#86 - Bump junit from 4.11 to 4.13.1

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#85 - Add publication to readme

Pull Request - State: closed - Opened by mcapuccini over 4 years ago

#84 - Use native HaplotypeCaller in tests

Pull Request - State: closed - Opened by mcapuccini almost 5 years ago

#83 - Use Java 8 in Travis

Pull Request - State: closed - Opened by mcapuccini almost 5 years ago

#82 - Upgrade Scala version

Pull Request - State: closed - Opened by mcapuccini almost 5 years ago

#81 - Revert "Release 0.4.0"

Pull Request - State: closed - Opened by mcapuccini almost 5 years ago

#80 - Release 0.4.0

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#79 - Improve partitioning when testing HaplotypeCallTest

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#78 - Reduce partitions when testing HaplotypeCallTest

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#77 - Add SNP calling test

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#76 - Use custom charset when reading text from container

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#75 - Minor MountPoint refactory

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#74 - Allow for custom charset

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#73 - Use HashPartitioner by default in partitionBy

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#72 - Custom partitioner

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#71 - Custom partitioning

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#70 - Mark collectReduce as experimental

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#69 - Force parallelism in collectReduce

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#68 - Test Virtual Screening on 1K molecules

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#67 - Add collectReduce primitive

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#66 - Fix example in README

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#65 - Fix reduce tree depth docs

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#64 - Bump up Spark dependency

Pull Request - State: closed - Opened by mcapuccini over 5 years ago

#63 - Implicit conversion for PortableDataStream

Issue - State: open - Opened by mcapuccini almost 6 years ago

#62 - Spark deps versioning

Issue - State: open - Opened by mcapuccini almost 6 years ago - 1 comment

#61 - Bump up Spark in test JAR

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#60 - Style refactoring

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#59 - Fix example in readme [skip ci]

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#58 - Fix example in README [skip ci]

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#57 - Push docs only for master

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#56 - Deploy every allowed branch

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#55 - Release 0.4.0-beta-1

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#54 - Build release branch (#53)

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#53 - Build release branch

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#52 - Release 0.4.0-beta-1

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#51 - Support multiple files, with multiple formats

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#50 - Remove deleted parameters from docs

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#49 - Refactory of Docker helper

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#48 - Implement reduce using a tree-like strategy

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#47 - Major Refactory

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#46 - Fix security exception introduced by shade

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#45 - Shading the whole Apache HTTP group

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#44 - Shade org.apache.http.client to prevent conflicts with Spark

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#43 - Fix DocumentContent not found in build

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#42 - Bump up Spark to 2.1.3

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#41 - Delete temp files on exit

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#40 - Pull image automatically (and minor test file name fix)

Pull Request - State: closed - Opened by mcapuccini almost 6 years ago

#39 - Documentation still uses old project name

Issue - State: closed - Opened by mcapuccini over 6 years ago - 1 comment

#38 - Renaming project to MaRe

Pull Request - State: closed - Opened by mcapuccini over 6 years ago

#37 - Update readme after 0.3.0 release [skip ci]

Pull Request - State: closed - Opened by mcapuccini over 6 years ago

#36 - Fix and improve cpsign test

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#35 - Flatten map results

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#34 - Downgrade json4s

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#33 - Add cpsign prediction test

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#32 - Improve logging and documentation

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#31 - Revert "Make EasyDocker public"

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#30 - Make EasyDocker public

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#29 - Update cpsign test

Pull Request - State: closed - Opened by mcapuccini almost 7 years ago

#28 - Improve exit status logs

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#27 - Do not add delimiter in simple reduce

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#26 - Add features to support cpsign

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#25 - Exclude virtual screening test from CI

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#24 - Add better logging messages

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#23 - Do not remove container, logs can be useful

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#22 - Add style checker

Pull Request - State: closed - Opened by mcapuccini about 7 years ago

#21 - Fix issues

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#20 - Multiline records support

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#19 - Need to close all files read with the Source method explicitely

Issue - State: closed - Opened by mcapuccini over 7 years ago

#18 - Remove extra test files

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#17 - getRDD not documented

Issue - State: closed - Opened by mcapuccini over 7 years ago

#16 - Temp files not deleted when RunTimeException

Issue - State: closed - Opened by mcapuccini over 7 years ago - 1 comment

#15 - Post release edits

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#14 - Fix codacy issues

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#13 - Make stable release, push to cetral

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#12 - Major refactory

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#11 - Empty iterator in MapPartition causes error

Issue - State: closed - Opened by mcapuccini over 7 years ago - 1 comment

#10 - Use /tmp as temporary directory if nothing has been defined by the user

Pull Request - State: closed - Opened by mcapuccini over 7 years ago - 1 comment

#9 - Add Spark Summit video to the readme

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#8 - Simplify test

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#7 - Add Sonatype deployment

Pull Request - State: closed - Opened by mcapuccini over 7 years ago

#6 - Add mapPartitions, and use it by default in MapCLI

Pull Request - State: closed - Opened by mcapuccini almost 8 years ago

#5 - Remove deleteOnExit to avoid to keep track of too many files

Pull Request - State: closed - Opened by mcapuccini almost 8 years ago

#4 - Delete tmp files in mapper/reducer

Pull Request - State: closed - Opened by mcapuccini almost 8 years ago

#3 - Deploy EASYMR_TMP and TMPDIR to workers in CLI

Pull Request - State: closed - Opened by mcapuccini almost 8 years ago

#2 - Add default behaviour when spark.default.parallelism is not provided

Pull Request - State: closed - Opened by mcapuccini almost 8 years ago

#1 - Major refactory

Pull Request - State: closed - Opened by mcapuccini almost 8 years ago - 1 comment