Ecosyste.ms: Issues

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GitHub / mazzalab/pyntacle issues and pull requests

#58 - Attempting to install Pyntacle on a closed network

Issue - State: open - Opened by brandonwallace12 over 2 years ago - 1 comment

#57 - [API] error in importing adjacency matrix with Pyntacle.importer

Issue - State: open - Opened by Bioswinger over 3 years ago - 2 comments

#56 - Bug fix #55 and release [ver. 1.3.2]

Pull Request - State: closed - Opened by irongraft over 3 years ago

#55 - [API] error in import nodes and edges attributes

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: bug

#54 - Issues42 48

Pull Request - State: closed - Opened by mazzalab almost 4 years ago

#53 - [cmd] Error in intersection

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: bug

#52 - [cmd ]Error in Pyntacle converter

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: bug

#51 - [API] error in group degree

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: docuerror

#50 - [cmd] error in communities fastgreedy command

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: docuerror

#49 - [cmd] error in pyntacle generate command

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: docuerror

#48 - [cmd] error in Kp-finder command

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 3 comments
Labels: bug

#47 - [cmd] error in Kp-info

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment
Labels: bug

#46 - [cmd] error in Pyntacle test

Issue - State: closed - Opened by Bioswinger almost 4 years ago - 1 comment

#45 - Pyntacle import error

Issue - State: closed - Opened by omairzkhan about 4 years ago - 2 comments

#44 - Remove API page

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: bug, docuerror

#43 - Update command-line page for release 1.3

Issue - State: open - Opened by mazzalab about 4 years ago
Labels: enhancement

#42 - Update Octopus page for release 1.3

Issue - State: open - Opened by mazzalab about 4 years ago
Labels: enhancement

#41 - Feat#31

Pull Request - State: closed - Opened by mazzalab about 4 years ago

#40 - Remove dependency to OrderedSet

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: good first issue

#39 - Drop Octopus

Issue - State: open - Opened by mazzalab about 4 years ago
Labels: enhancement

#38 - Update pyntacle-ink report to include SGD search results

Issue - State: open - Opened by mazzalab about 4 years ago
Labels: enhancement

#37 - Remove dependency to ordered dictionary

Issue - State: open - Opened by mazzalab about 4 years ago - 1 comment
Labels: enhancement

#36 - Install igraph (0.8.2) through Conda

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: enhancement

#35 - SGD unittests

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: good first issue

#34 - Upgrade to the 3.7 base Python version

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: enhancement

#33 - Unhandled exceptions

Issue - State: open - Opened by mazzalab about 4 years ago
Labels: bug

#32 - Get rid of Cairo dependency

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: enhancement

#31 - Implementation of Stochastic Gradient Descent

Issue - State: closed - Opened by mazzalab about 4 years ago
Labels: enhancement

#30 - Feat 5

Pull Request - State: closed - Opened by mazzalab about 4 years ago

#29 - WARNING: test_convert_dot

Issue - State: closed - Opened by mazzalab about 4 years ago - 1 comment
Labels: enhancement

#28 - Pyntacle-Ink bug: "initial value" and "value" are swapped

Issue - State: closed - Opened by mazzalab over 4 years ago - 1 comment
Labels: bug

#27 - Implementation of the feat. 24

Pull Request - State: closed - Opened by mazzalab over 4 years ago

#26 - Centrality Measures for Weighted graphs?

Issue - State: closed - Opened by alexberd over 4 years ago - 1 comment

#25 - gr-finder bruteforce test fails

Issue - State: closed - Opened by mtruglio over 4 years ago - 2 comments
Labels: bug

#24 - Uniform result types between greedy and brute-force optimization methods

Issue - State: closed - Opened by mazzalab almost 5 years ago - 1 comment
Labels: enhancement

#23 - the command line option --type m-reach in kp-finder produces no output

Issue - State: closed - Opened by mtruglio about 5 years ago - 1 comment
Labels: bug

#22 - Pyntacle ink

Pull Request - State: closed - Opened by wariobrega about 5 years ago

#21 - Fix check for None value of sp_matrix in keyplayer.py

Issue - State: closed - Opened by mazzalab about 5 years ago - 1 comment

#20 - Incorrect import of enumerators in all modules

Issue - State: closed - Opened by mazzalab about 5 years ago - 1 comment

#18 - Pyntacle fails on a conda environment created with Python 3.7

Issue - State: closed - Opened by wariobrega almost 6 years ago

#17 - pyntacle test error for option not considered:

Issue - State: closed - Opened by wariobrega almost 6 years ago

#16 - CUDA Error on a server with no CUDA GPU acceleration:

Issue - State: closed - Opened by wariobrega almost 6 years ago

#15 - Error in Brute-Force parallel processing on an AMD server

Issue - State: closed - Opened by wariobrega almost 6 years ago - 1 comment

#13 - Rename method "eigenvector_centrality"

Issue - State: closed - Opened by mazzalab over 6 years ago - 1 comment

#12 - Report format in xlsx not working (producing tab-separated file instead)

Issue - State: closed - Opened by wariobrega over 6 years ago
Labels: bug

#11 - Plotting of BruteForce Search KP sets does not report all possible solutions

Issue - State: closed - Opened by wariobrega over 6 years ago
Labels: enhancement

#10 - Move octopus.py

Issue - State: closed - Opened by mazzalab over 6 years ago
Labels: enhancement

#9 - Logger and texts

Issue - State: closed - Opened by mazzalab over 6 years ago
Labels: enhancement

#8 - Weird SIF importing when loading files with extra tab

Issue - State: closed - Opened by mazzalab over 6 years ago
Labels: bug

#7 - Loading Binary file outputted from "--save-binary" error

Issue - State: closed - Opened by mazzalab over 6 years ago - 1 comment
Labels: bug

#6 - SIF file importing is slow for very large SIF files

Issue - State: closed - Opened by mazzalab over 6 years ago - 1 comment
Labels: help wanted

#4 - bruteforce parallel implementation not working

Issue - State: closed - Opened by wariobrega over 6 years ago - 1 comment
Labels: bug

#3 - shortest_path_cpu in local_topology error for a sngle node

Issue - State: closed - Opened by wariobrega over 6 years ago - 1 comment
Labels: bug

#2 - Daniele reworking

Pull Request - State: closed - Opened by wariobrega over 6 years ago

#1 - Daniele reworking

Pull Request - State: closed - Opened by mtruglio over 6 years ago